Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00343 ATGAAGATGAAGGCAACGCTGAGATACTTAGCAGGAATTGCAGGCCCTAGTGGCTTTGGCTCAAATTCGACGGCCGAGCAAGTTACACAAGATTGTTCTTCCTTTCTCCCTTCTCATCTGACTGCTCTCATTACTGGGGCGACTTCTGGTATTGGAGCTGAAACAGCGAGAGTGTTGGCAAAGAGAGGAGTGAGAGTTGTGATTGGTGCGAGGGATTTGAAGAAGGCAAGACAAGTGAGAGAGAATATCCATAAAGAGACTCCAAATGCTGAGGTTATTCTGTTGGAGATTGATCTCAGCTCTTTTGCCTCCGTACAGAGATTTTGTTCCGAGTTTTTTGCACTAGGACTACCCCTTAATATCCTCATAAACAATGCTGGAATATTCTCTCAGAACTTGGAGTTCTCTGAAGACAAAATTGAGATGACATTTGCCACAAACTATTtagGACATTTTTTGTTAACCGAAATGCTACTggagaaaatgatagaaacGGCTGAGATGACAGGATTTCAAGGGAGAATAATAAACGTTTCTTCTGTTATACACAATTGGGTGAAAAGAGATGGCTTTTGTTTCAACGACTTACTCAACGGAAAAAATTATAATGGCACACGTGCGTATGCTCAATCAAAATTGGCCAATATTTTGCATGCAAGGGAAATGGCGAGACAGCTAAAGGCAAGGAATGCAAGAGTAAGTATCAATGCAGTCCATCCAGGTATCGTGAAGACAGGAATTATTAGAGCTCACAAGGGCTTGCTAACAGATTCTCTGTTTTTCATTGCATCCAAGTTACTGAAATCAACGTGTCAGGGTGCATCAACCACGTGTTATGTTGCTCTGAGCCCACAGACAGAAGGGGTCAGTGGGAAATACTTTGCAGAttgtaatgaaaataaatgctCAAGTCTAGCAAATGACGAATCGGAAGCTCAAAAGCTATGGAAAAACACTTGTGCATTGCTTCACAAAAGATTATGCCAAGCCACAATATG 998 0.4058 MKMKATLRYLAGIAGPSGFGSNSTAEQVTQDCSSFLPSHLTALITGATSGIGAETARVLAKRGVRVVIGARDLKKARQVRENIHKETPNAEVILLEIDLSSFASVQRFCSEFFALGLPLNILINNAGIFSQNLEFSEDKIEMTFATNYLGHFLLTEMLLEKMIETAEMTGFQGRIINVSSVIHNWVKRDGFCFNDLLNGKNYNGTRAYAQSKLANILHAREMARQLKARNARVSINAVHPGIVKTGIIRAHKGLLTDSLFFIASKLLKSTCQGASTTCYVALSPQTEGVSGKYFADCNENKCSSLANDESEAQKLWKNTCALLHKRLCQATI 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00343 332 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 6 328 - -
Bva05g00343 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 117 128 IPR002347 -
Bva05g00343 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Bva05g00343 332 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 173 181 IPR002347 -
Bva05g00343 332 Gene3D - 37 327 - -
Bva05g00343 332 PRINTS Glucose/ribitol dehydrogenase family signature 117 128 IPR002347 -
Bva05g00343 332 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Bva05g00343 332 PRINTS Glucose/ribitol dehydrogenase family signature 41 58 IPR002347 -
Bva05g00343 332 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Bva05g00343 332 PRINTS Glucose/ribitol dehydrogenase family signature 167 183 IPR002347 -
Bva05g00343 332 PANTHER RETINOL DEHYDROGENASE 6 328 - -
Bva05g00343 332 CDD retinol-DH_like_SDR_c_like 41 316 - -
Bva05g00343 332 Pfam short chain dehydrogenase 41 182 IPR002347 -
Bva05g00343 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 300 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00343 Bva-Chr5 1697764 1700896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00343 41 247 Acyl Lipid Metabolism Gene Families AT1G63380 29.907 5.18e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00343 - - gmx:100801384 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00343 05 1697764 1700896 Bva06g01396 06 10319627 10323798 BWGD
Bva05g00343 05 1697764 1700896 Bva05g00343 05 1697764 1700896 ECH