Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01249 ATGTGGGCTGCGTACGCTCTCTACTCGCACCATACCTTTTTCAATTCTGGAGTTTCCCTTGGCATCCGCTTCCAGGTGGTGACAATGTCGACTCCTGCTAGGAAGAGGCTGATGAGAGATTTTAAGAGGCTCCAACTAGATCCCCCTGCAGGAATCAGTGGTGCGCCTCAGGACAATAATATAATGCTTTGGAATGCTGTCATTTTTGGTCCTGATGATACTCCATGGGATGGAGGAACGTTTAAGTTGACTCTCCAATTTACAGAAGATTATCCAAACAAACCACCAACTGTACGATTTGTCTCCAGAATGTTTCATCCCAATATTTATGCAGATGGAAGTATTTGTTTGGATATCTTACAAAATCAATGGAGTCCTATATATGATGTAGCTGCTATACTCACCTCCATCCAGTCGCTGCTCTGTGATCCAAACCCCAATTCTCCTGCAAACTCTGAAGCAGCTAGGATGTTTAGTGAGAACAAGCGCGAGTACAACCGAAGAGTGAGGGAAATTGTGGAGCAGAGCTGGACAGCTGACTA 542 0.4502 MWAAYALYSHHTFFNSGVSLGIRFQVVTMSTPARKRLMRDFKRLQLDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01249 180 SMART ubc_7 35 178 - -
Bva06g01249 180 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 19 180 - -
Bva06g01249 180 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 19 180 - -
Bva06g01249 180 Gene3D Ubiquitin Conjugating Enzyme 27 176 IPR016135 -
Bva06g01249 180 SUPERFAMILY UBC-like 24 178 IPR016135 -
Bva06g01249 180 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 32 178 IPR000608 -
Bva06g01249 180 CDD UBCc 35 173 IPR000608 -
Bva06g01249 180 Pfam Ubiquitin-conjugating enzyme 36 172 IPR000608 -
Bva06g01249 180 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 105 120 IPR023313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01249 Bva-Chr6 9600131 9603373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01249 35 148 Miscellaneous Gene Families AT1G17280 31.092 6.98e-15 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01249 K10573 - csin:114267922 317.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01249 06 9600131 9603373 Bva05g00453 05 2239016 2244374 ECH
Bva06g01249 06 9600131 9603373 Bva06g01249 06 9600131 9603373 ECH