Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00453 ATGGAAAACAACAATATCTTCCAATCCTACATGCTAAAGAACAATACCTCAACTCCTCCTCATCCTTCTCCTCAAGCTCAAGGTGCTCTGCCAGCTGACCCCACGTTTCAGTCCGCACTGGCAGCTGCTCTTACTTCAATCATTGGCACTGTGAGTAATGGGATCGGAGGAATGTCCCAATCAGTAAATCTGGAACATGGTGGGGTTGGAGAAAATCTGGGtcagaaaatgaaatgggGAGAGAAGTTTCCAACGTCGACGTCAACTTCCAAACTCAATTTCAGCTATCAAGCTTTCTACTCACACCACACCTTTTCGAATTTTGGAGTTTATCTTGGCATCCGCTTCCAGGTGGTGACTATGTCGACTCCTGCTAGGAAAAGGCTGATGAGAGATTTTAAGAGGCTCCAACTAGACCCCCCTGCAGGAATCAGTGGTGCGCCTCAGGACAATAATATAATGCTTTGGAATGCTGTTATTTTTGGTCCCGATGATACTCCATGGGATGGAGGTACGTTTAAGTTGACTCTCCAAATTACAGAGGATTATCCAAACAAACCACCGAATGTACGATTTGTCTCTAGAATGTTTCATCCCAATATTTATGCAGATGGAAGTATTTGTTTGGATATATTACAAAATCAGTGGAGTCCTATATATGATGTGGCTGCTATACTCACCTCTATCCAGTCACTGCTTTGTGATCCAAACCCAAATTCTCCTGCAAACTCAGAAGCAGCTCGGCTGTTCAGTGAGAATAAGCGCGATTATAACCGAAGAGTGAGGGAAATTGTGGAGCAGAGCTGGACCGCTGACTA 818 0.4364 MENNNIFQSYMLKNNTSTPPHPSPQAQGALPADPTFQSALAAALTSIIGTVSNGIGGMSQSVNLEHGGVGENLGQKMKWGEKFPTSTSTSKLNFSYQAFYSHHTFSNFGVYLGIRFQVVTMSTPARKRLMRDFKRLQLDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQITEDYPNKPPNVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENKRDYNRRVREIVEQSWTAD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00453 272 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 197 212 IPR023313 -
Bva05g00453 272 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 124 270 IPR000608 -
Bva05g00453 272 SUPERFAMILY UBC-like 115 270 IPR016135 -
Bva05g00453 272 Gene3D Ubiquitin Conjugating Enzyme 119 268 IPR016135 -
Bva05g00453 272 SMART ubc_7 127 270 - -
Bva05g00453 272 CDD UBCc 127 265 IPR000608 -
Bva05g00453 272 Pfam Ubiquitin-conjugating enzyme 128 264 IPR000608 -
Bva05g00453 272 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 111 272 - -
Bva05g00453 272 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 111 272 - -
Bva05g00453 272 MobiDBLite consensus disorder prediction 12 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00453 Bva-Chr5 2239016 2244374 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00453 127 240 Miscellaneous Gene Families AT1G17280 30.252 1.19e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00453 K10573 - pvy:116132073 310.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01249 06 9600131 9603373 Bva05g00453 05 2239016 2244374 ECH
Bva05g00453 05 2239016 2244374 Bva05g00453 05 2239016 2244374 ECH