Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01241 ATGTTAGAGGGTCCATCCTTTATCGTTTCAAGGGACTTACCAAGCTCGGTTGAAGAGGAGAGCAAGTGGATATACAACACTCATCGTGTGATGGAGCTATCAAACAAAAAGCGCCAGCTGGAAGATGACAAGGAACCAACTGTTTTGCTGAAGTCATGCAAACTTTCGGAAGCTGCTGGGGAAGGGAGTTCACATATCAATGTCCATGATCTTTCCCTTTCTCGGAACCAAACCAATGACCAAAATCATGCAGGGGATCAGTCTGATTCTAGTTCACTTATCATTCAGCTTGGTCGGGACCTCTCAATTAATTGTCTCCTTCGATGCTCAAGGTCTGATTATGGCTCAATTGCTGCATTGAATAGGAGCTTTCGAGATATCATTCGGACTGGAGAGCTGTATAAGCTCAGGCAGCTGATGGGTATAATCGAACATTGGGTTTACTTCTCTTGTAATCTTCTTGAATGGGAAGCATTTGATCCATACAGCCGACGATGGATGTGCTTACCTCCAATGACTTCTAATGGTTATGACTGCTTTATGTGTTCAGATAAGGAGTCATTGGCCGTTGGTACAGAGCTTCTTGTTTTTGGAATGGAAATAACGTCAACAATCATTCACCGGTATAGCATTTTAACAAACACATGGTCATCTGGCATGCAAATGAATACTCCTAGATGCTTGTTCGGTTCTGCCAGCCTTGGAGCAATAGCTATAGTAGCTGGTGGTTGTGATCCATCAGGCAACATCTTAAGCTCAGCTGAACTTTACAATTCAGATACTGCAATATGGATGACTCTACCAAGCATGCATAAACCAAGGAAAATGTGCTCTGGTGTATTTAtgaatggaaaattttatgtcattgGTGGGGTTGGAGTTGATAACTCTGGGCAACTAACATGTGGGGAGGAATTTGATCTCCAGACAGGAACATGGCGTGAGATACCCAACATGTTCCCTGCACGTAGTGGGGCAACTGGGGTGAATGAGGCACCTCCTCTTATTGCAGTTGTAAATAATGTGCTGTATGCTGCAGATTTTGAACAGTCAGAGTTAAAGAGATATCATCAAGACCAGAACTCATGGGCCATAATTGGAAGAATGCCTGAGAGGGCAGCTGCAATGAACGGCTGGGGAGTTGCCTTCCGGGCATGCGGAGAGCAACTTATCGTGATTGGTGGACCCAAGGGCTCGGAAGCAGGGCTTGAGGTCAATGCATGGGTCCCGGATGAAGGTAGAGCAAGATGGGATCTTCTGGCGAGGAAGCGTAGAGGTAACTTCGTCTATAACTGCGCCGTGATGGGATGTTG 1313 0.4486 MLEGPSFIVSRDLPSSVEEESKWIYNTHRVMELSNKKRQLEDDKEPTVLLKSCKLSEAAGEGSSHINVHDLSLSRNQTNDQNHAGDQSDSSSLIIQLGRDLSINCLLRCSRSDYGSIAALNRSFRDIIRTGELYKLRQLMGIIEHWVYFSCNLLEWEAFDPYSRRWMCLPPMTSNGYDCFMCSDKESLAVGTELLVFGMEITSTIIHRYSILTNTWSSGMQMNTPRCLFGSASLGAIAIVAGGCDPSGNILSSAELYNSDTAIWMTLPSMHKPRKMCSGVFMNGKFYVIGGVGVDNSGQLTCGEEFDLQTGTWREIPNMFPARSGATGVNEAPPLIAVVNNVLYAADFEQSELKRYHQDQNSWAIIGRMPERAAAMNGWGVAFRACGEQLIVIGGPKGSEAGLEVNAWVPDEGRARWDLLARKRRGNFVYNCAVMGC 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01241 437 Gene3D - 133 435 IPR015915 GO:0005515
Bva06g01241 437 Pfam Kelch motif 225 270 IPR006652 GO:0005515
Bva06g01241 437 Pfam Kelch motif 273 319 IPR006652 GO:0005515
Bva06g01241 437 SUPERFAMILY Kelch motif 152 434 IPR015915 GO:0005515
Bva06g01241 437 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP11 1 437 - -
Bva06g01241 437 SMART kelc_smart 237 284 IPR006652 GO:0005515
Bva06g01241 437 SMART kelc_smart 285 333 IPR006652 GO:0005515
Bva06g01241 437 SMART kelc_smart 193 236 IPR006652 GO:0005515
Bva06g01241 437 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 1 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01241 Bva-Chr6 9548080 9552292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01241 94 318 Miscellaneous Gene Families AT4G33900 26.638 5.59e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01241 - - gmx:100788507 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01241 06 9548080 9552292 Bva05g00460 05 2272188 2275680 ECH
Bva06g01241 06 9548080 9552292 Bva06g01241 06 9548080 9552292 ECH