Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01218 ATGGTAGCAGCATCGTTAGCTACCTTCACGGTTGGAACAGTTGCCTCCCCCACCCAGAGAGGGAGCTCGCTTCCTCATTCAAAGCCTTTTGCTTTGAGATTCAACTCTCTCAAGAATTTCTGTGCCCTCGTGGCCGTATCATCTGTGATCTGTGAGTCAGAgtcagaatcatccacctcaGAGAAGGAAATCGTTTCTGTTCCGAAGGCATCTTGTGCAACCAATGCCGAAAATGTCAACCAGCCTCAGCAGTTCTTGGTGCTGCTGGAGCGAGCTTCAATTCAAGAGATTGAGATGGCAGCAACATCGGCGGCTACCTTCACAGTTGGAACAGCTGCTTCTCCCACCCAGAGAGGGAGCTCACTTCCTCAGTCAAAGCCTTTTGCTTTGAGATTCAACTCTCTTAAGAATTTCTGCGGCCTCAAAGCTGCATCATCTGTGATCTCTGAGTCAGAATCATCCTTCACGGGGAAGGAAACCGTTTCTGCTCTGAGGGCATCTTTTGCAACCAAAGCCCAAAAGGTCAACCAAAATCACCAGCATCACTTTCAGCCTCAGGCTTCCTTCAAGGTAGCAGTTCTTGGTGCTGCTGGAGGGATAGGTCAACCCTTGGCACTTCTTACCAAGATGTCCCCACTAGTTTCCGACCTGCATCTGTACGATATTGCAAATGTCAAGGGAGTTGCTGCAGATCTCAGTCATTGTAATACACCTTCCCAGGTTCACGCTTTCACCGGAGCTTCTGAGTTAGCAAACTCCTTGAAAGATGTCAATGTTGTTGTTATACCTGCTGGAGTTCCAAGGAAGCCTGGTATGACTCGTGACGACCTTTTCAACATCAATGCCGGCATTGTGAGAGACTTGGTTGCAGCTGTTGCGGATAATTGCCCTGATGCTTTCATTCATATTGTCAGTAACCCAGTAAACTCTACAGTGCCTATCGCCGCAGAAGTTCTGAAACAGAAGGGTGTCTATAATCCTAAAAAGCTATTTGGTGTTACTACACTGGATGTTGTGAGGGCGAACACATTTGTTGCTCAGAGAAAGAACCTGAAGTTGATTGATGTTGATGTCCCAGTTGTTGGTGGCCATGCTGGGATAACCATTTTGCCTCTGTTGTCAAAGACAAAACCCTCAATAAGCTTTACTGATGAAGAAATCGAAGAGTTGACTGTCAGGATCCAAAATGCTGGAACAGAAGTTGTTGAAGCAAAGGCAGGTGCAGGGTCTGCTACTTTGTCGATGGCATATGCAGCTGCGAGATTTGTTGAATCATCTCTCCGTGCACTTGATGGAGATGGGGATGTCTATGAGTGCTCCTATGTAGAATCAAATCTGACTGAGCTTCCATTCTTTGCTTCAAGGGTGAAGATTGGAAGGGAGGGGGTTGAAGCTTTCGTTTCATCCGACCTACAAGGATTGACTGAGTATGAGCAGAAGGCTTTGGAAGCGCTTAAGCCAGAACTTAAGGCCAGCATTGAGAAGGGGTTTGCTTTTGCTCAGAAGCAAACTGTGACtgctta 1523 0.4629 MVAASLATFTVGTVASPTQRGSSLPHSKPFALRFNSLKNFCALVAVSSVICESESESSTSEKEIVSVPKASCATNAENVNQPQQFLVLLERASIQEIEMAATSAATFTVGTAASPTQRGSSLPQSKPFALRFNSLKNFCGLKAASSVISESESSFTGKETVSALRASFATKAQKVNQNHQHHFQPQASFKVAVLGAAGGIGQPLALLTKMSPLVSDLHLYDIANVKGVAADLSHCNTPSQVHAFTGASELANSLKDVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVAAVADNCPDAFIHIVSNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVVGGHAGITILPLLSKTKPSISFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSYVESNLTELPFFASRVKIGREGVEAFVSSDLQGLTEYEQKALEALKPELKASIEKGFAFAQKQTVTA 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01218 507 SUPERFAMILY LDH C-terminal domain-like 333 500 IPR015955 GO:0003824|GO:0016616
Bva06g01218 507 Gene3D - 334 505 IPR015955 GO:0003824|GO:0016616
Bva06g01218 507 CDD MDH_glyoxysomal_mitochondrial 189 500 IPR010097 GO:0006099|GO:0030060
Bva06g01218 507 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 190 501 IPR010097 GO:0006099|GO:0030060
Bva06g01218 507 Pfam lactate/malate dehydrogenase, NAD binding domain 190 332 IPR001236 GO:0016491
Bva06g01218 507 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 189 332 IPR036291 -
Bva06g01218 507 ProSitePatterns Malate dehydrogenase active site signature. 333 345 IPR001252 GO:0006108|GO:0016615
Bva06g01218 507 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 334 499 IPR022383 GO:0016616
Bva06g01218 507 Gene3D - 187 333 - -
Bva06g01218 507 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 121 507 - -
Bva06g01218 507 PANTHER MALATE AND LACTATE DEHYDROGENASE 121 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01218 Bva-Chr6 9445526 9448756 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01218 K00026 - zju:107419247 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01218 06 9445526 9448756 Bva05g00484 05 2380293 2382522 ECH
Bva06g01218 06 9445526 9448756 Bva06g01218 06 9445526 9448756 ECH