Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00484 ATGGCGGCAGCATCGGCAGCTACCTTCACAGTTGGAACAGCTGCCTCCCCCACCCAAAGTGGGAGCTTGCTTCCTCAGTCAAAGCCTTTTGCTTTGAGATTCAACTCTTTTAAGAACTTCTGTGGCCTCAAAGCTGCATCATCTGTGATCTCTCAGTCAGAATCATCCTTCTCGGGGAAGGAAACCATTGCTGCTCTGAGGGCATCTTTTGCAACCAAAGCCCAAAAGGTAGACCAAAATCTCCAGCATCACCTGCAGCCTCAGGCTTCCTTCAAAGTAGCAGTTCTTGGTGCTGCTGGAGGGATAGGTCAACCATTGGCACTTCTTATCAAGATGTCCCCTTTAGTTTCCGACCTGCATCTGTATGATGTTGCAAATGTCAAGGGAGTTGCTGCAGATCTCAGCCATTGCAATACACCTTCCCAGGTTCATGCTTTTACTGGAGCTTCTGAGTTAGCAAACTCTTTGAAAGGTGTCAACGTTGTCGTTATACCTGCTGGAGTTCCAAGGAAGCCTGGCATGACTCGTGACGATCTTTTCAACATCAATGCCGGCATAGTGAGAGACTTGGTTGCAGCTGTTGCAGACAATTGCCCTGATGCTTTCATTCACATTATCAGTAACCCCGTAAACTCTACAGTGCCTATTGCAGCAGAAGTTCTGAAACAGAAGGGTGTATATGATCCTAAAAAACTATTTGGTGTTACGACACTGGATGTTGTGAGGGCGAATACATTTGTTGCTCAGAGGAAGAACCTGAAGTTGATTGATGTTGATGTCCCAGTTATCGGTGGCCATGCTGGGATTACCATTTTACCTCTGTTGTCAAAGACAAAACCCTCAGTAAGCTTCACTGacgaagaaattgaagagttgACTGTCAGGATCCAAAATGCTGGGACAGAAGTTGTTGAAGCAAAGGCAGGTGCAGGATCTGCTACTTTGTCGATGGCATATGCAGCAGCTAGATTTGTTGAATCATCTCTCCGTGCACTTGATGGAGATGGGGATGTCTACGAGTGCTCCTATGTGCAATCAGATCTGACTGAGCTTCCATTCTTTGCTTCAAGGGTGAAGATTGGAAGGAAGGGAGTTGAAGCTTTGATTTCATCTGACCTCCAAGGATTGACTGAGTATGAGCAGAAGGCTTTAGAAGCACTTAAGCCAGAACTTAAGGCCAGCATTGAGAAGGGCATTTCTTTTGCTCAGAAGCAAACTGTGACGGCTTA 1229 0.4565 MAAASAATFTVGTAASPTQSGSLLPQSKPFALRFNSFKNFCGLKAASSVISQSESSFSGKETIAALRASFATKAQKVDQNLQHHLQPQASFKVAVLGAAGGIGQPLALLIKMSPLVSDLHLYDVANVKGVAADLSHCNTPSQVHAFTGASELANSLKGVNVVVIPAGVPRKPGMTRDDLFNINAGIVRDLVAAVADNCPDAFIHIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQRKNLKLIDVDVPVIGGHAGITILPLLSKTKPSVSFTDEEIEELTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDGDVYECSYVQSDLTELPFFASRVKIGRKGVEALISSDLQGLTEYEQKALEALKPELKASIEKGISFAQKQTVTA 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00484 409 SUPERFAMILY LDH C-terminal domain-like 235 403 IPR015955 GO:0003824|GO:0016616
Bva05g00484 409 PANTHER MALATE DEHYDROGENASE, GLYOXYSOMAL 25 409 - -
Bva05g00484 409 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 236 401 IPR022383 GO:0016616
Bva05g00484 409 CDD MDH_glyoxysomal_mitochondrial 91 402 IPR010097 GO:0006099|GO:0030060
Bva05g00484 409 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 91 234 IPR036291 -
Bva05g00484 409 Gene3D - 89 235 - -
Bva05g00484 409 ProSitePatterns Malate dehydrogenase active site signature. 235 247 IPR001252 GO:0006108|GO:0016615
Bva05g00484 409 Gene3D - 236 407 IPR015955 GO:0003824|GO:0016616
Bva05g00484 409 PANTHER MALATE AND LACTATE DEHYDROGENASE 25 409 - -
Bva05g00484 409 TIGRFAM MDH_euk_gproteo: malate dehydrogenase, NAD-dependent 92 403 IPR010097 GO:0006099|GO:0030060
Bva05g00484 409 Pfam lactate/malate dehydrogenase, NAD binding domain 92 234 IPR001236 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00484 Bva-Chr5 2380293 2382522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00484 K00026 - zju:107419247 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01218 06 9445526 9448756 Bva05g00484 05 2380293 2382522 ECH
Bva05g00484 05 2380293 2382522 Bva05g00484 05 2380293 2382522 ECH