Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01139 ATGATCTCTCTTGCTCCTCCTTCTCTCGACTTCAAAATCGTGTCCCCGCAGatGGCAATGCAGGAAGCAAGCCCGGCCCTTGCTCCTAGTCCTCAAGTTGTCGGTAATGCCTTTGTGGAGCAATATTACCACATACTACACCAATCCCCAAACTTGGTACATAGATTTTATCAGGATTCAAGTTTCTTAAGTCGAGCAGATGGCAACGGTGAGATGACAACAGTGACAACTCTGCAAgcaataaatgaaaagattcTTTCCCTGAATTATGAAGACTATACCGCAGAAATAAAAACTGCAGATGCTCAGGAATCATATAGAAAAGGTGTGATAGTTTTAGTAACTGGAAGCTTAACTGGAAAGGATGATGTGACAAGGAAGTTTTCACAAACCTTCTTTCTGGCTCCACAAGATAAAGGCTACTATGTCTTAAATGACGTCTTTAGGTTTGTTGAGGAGAGCGACACATCACAGTTAAATCCTGTCCCAGTAAATGtcataaatgaaaatgctgAGGCAGCTCCGATGCCAGAAACAGAGGTTGTACATGCTCCTGAACATCATGTGGCAGATCCTGCAACTTCGGCAGAGGGGGAACACCTTAATAATAGTGCTGAAGTTGTTGATCCTTTAGACGACAAGGAAGAAGGATCAGTTATTGATGAAGAGGTTGTTGAACCCGCCACTGATTTAAGTCAGAACAATATCATTGCAAGTGGTGATTCAATTCCAGTCGTGTCGGATGATGCACCAAAGAAATCATATGCATCGATTGTGAAGGTAATGAAAAGCAATGCAGCCTCTGGTCCTGTCTATGTTCCcagtaaaactataaaagtgACACCTGCAAAAACTGTTCAACAATTGCCTCCTAATGCCAATTCTACTCCTGGACCTGAGGCAGTATCTCCTAGTAGTGACAATGTTCCTGGGAATAGTGATATTCATGAAGAAGCTGAAGGTCACTCCATATATGTACGGAATTTACCATTTAATGCAACAGTTGAACAACTGGAAGAAGTGTTTAAGAAATTTGGTTCTATTAAGCCTGATGGAATCCAAGTTAGAAGTAGTAAGGGGTtctgttttggttttgttgaatttgaagAGTTGAGTTCCATGCAGAGTGCACTTAAGgCTTCACCTATCACAGTTGGAGACCGACAAGCTGTCATTGAGGAAAAGAGAACTACTACTCGAGTTAGCGGCAGTGGGAGAGGGAGGTATCCTTCAGGAAGAAGTGGGTTCCGAAATGATAGTTTCAGAAACCGTGGGAAATTTGGTGGTGGGCGTGGTTATGGCAGAAATGAATTTAGAAGCCAAGGGGAGCATTCAGGACGACCAAAGGGTTCAGCAGAGCAGAAAGGAGATAGTTCTCAACGGGTAAGTCAGAATGGAGGTGGACGATACGGCCGTCAAGGTGGGGCAAACCGTAGTTCTATACCCTCAACTTCAGCATA 1460 0.4151 MISLAPPSLDFKIVSPQMAMQEASPALAPSPQVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRADGNGEMTTVTTLQAINEKILSLNYEDYTAEIKTADAQESYRKGVIVLVTGSLTGKDDVTRKFSQTFFLAPQDKGYYVLNDVFRFVEESDTSQLNPVPVNVINENAEAAPMPETEVVHAPEHHVADPATSAEGEHLNNSAEVVDPLDDKEEGSVIDEEVVEPATDLSQNNIIASGDSIPVVSDDAPKKSYASIVKVMKSNAASGPVYVPSKTIKVTPAKTVQQLPPNANSTPGPEAVSPSSDNVPGNSDIHEEAEGHSIYVRNLPFNATVEQLEEVFKKFGSIKPDGIQVRSSKGFCFGFVEFEELSSMQSALKASPITVGDRQAVIEEKRTTTRVSGSGRGRYPSGRSGFRNDSFRNRGKFGGGRGYGRNEFRSQGEHSGRPKGSAEQKGDSSQRVSQNGGGRYGRQGGANRSSIPSTSA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01139 486 Pfam Nuclear transport factor 2 (NTF2) domain 34 150 IPR002075 -
Bva06g01139 486 MobiDBLite consensus disorder prediction 452 467 - -
Bva06g01139 486 SUPERFAMILY RNA-binding domain, RBD 319 426 IPR035979 GO:0003676
Bva06g01139 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 322 397 IPR000504 GO:0003723
Bva06g01139 486 Gene3D - 304 403 IPR012677 -
Bva06g01139 486 SUPERFAMILY NTF2-like 30 151 IPR032710 -
Bva06g01139 486 MobiDBLite consensus disorder prediction 395 486 - -
Bva06g01139 486 SMART rrm1_1 323 393 IPR000504 GO:0003723
Bva06g01139 486 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 324 380 IPR000504 GO:0003723
Bva06g01139 486 CDD NTF2 30 152 IPR018222 -
Bva06g01139 486 MobiDBLite consensus disorder prediction 287 315 - -
Bva06g01139 486 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 18 480 IPR039539 -
Bva06g01139 486 ProSiteProfiles Nuclear transport factor 2 domain profile. 34 150 IPR018222 -
Bva06g01139 486 MobiDBLite consensus disorder prediction 437 451 - -
Bva06g01139 486 Gene3D - 25 154 - -
Bva06g01139 486 MobiDBLite consensus disorder prediction 287 312 - -
Bva06g01139 486 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 18 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01139 Bva-Chr6 9041944 9046986 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01139 K24983 - gmx:100801253 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01139 06 9041944 9046986 Bva05g00561 05 2770969 2776177 ECH
Bva06g01139 06 9041944 9046986 Bva06g01139 06 9041944 9046986 ECH