Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00561 atgGCAGTGCAGGAAGCAAGCCCTGCCCCGGCTCCTAGTGCTCAAGTTGTCGGCAATGCCTTTGTGGAGCAATATTACCGCATTCTACACCAATCTCCAAGTTTGGTGCATAGATTTTATCATGATTCAAGTTTCTTAAGTCGAGCAGATGGCAATGGTGTGATGACAACAGTGACAACTACACAAGCAATCAATGAAAAGATTCTTTCACTGAATTATGAAGACTATACAGCAGAAATAAAAACTTCAGATGCTCAGGAGTCATATGGAAAAGGTGTGATAGTTTTAGTAACTGGAAGCTTAACTGGGAAGGATGATGTGAGAAGGAAGTTCTCGCAGACATTCTTTCTAGCTCCACAAGATAAAGGCTACTATGTCTTAAATGACGTCTTTAGGTTTGTTGAGGAGAGCAACACATCTCAGTCAAATTCTGTCCCAGTAAATGTCATCAATGAAAATGCTGAGGCAGCTCCCTTGCCAGAAACAGACGTCATACATACTCCTGAACATCATGTGGCAGACCCTCCAACTTCTGCAGAAGGGAAACACCTTAATAATGGTGCTGAAGGTTGTGATCCCTTAGACAACGAAGAAGAAGGATCAGTTATTGATGAAGAGGTTGTTGAACCTACTAccaatttaaatcaaaataataacattgaAAGTGGTGATTCAGTTCCACTTGTCGAAGATGATGCACCAAGGAAATCATATGCATCAATAGTAAGGAAAAGCTATGCAGCCTCTGGTCCTGTCTATGTTCCCAGCAGAACTGCAAAAGTAACATCTGCAAACACTGTTGGACAATTGCCTCCTACTGCCAAATATATTTCTGCACCTGAGGCAGTATCTTCTATTAGTGAAAATGTTCCTGGGAGTAGTGATATTCATGAAGAAGcTGAAGGCCACTCCATATACGTACGGAATTTGCCCTTTAATGCAACAGTTGAACAACTGGAGGAAGTGTTTAAGAAATTTGGTTCTATTAAGCATGATGGAATCCAAGTTAGAAGTAGTAAGCGGGGATTCTGTTTTGGCTTTGTTGAATTTGAAGAGTTGAGTTCCAGGCAAAGTGCACTTGAGgCTTCACCTATCACAGTTGGAGATCGACAAGCTGTAATTGAGGAAAAGAGAACTACTACACGAGTTAGCGGCAGTGGAAGAGGGAGATATAGTTCAGGAAGAAGTGGGTTCCGAAATGAAAGTTTTAGAAACCGTTGGAAATACGGTGGTGGGCGTGGTTATGGCAGAAATGAGTTTAGAAGCCAAGGGGAGCTTTCAGGACGACCGAAGGGTTCAGCAGGACAGAAGGGAGATAGTTCTCAACGGGTAAGTCAGAATGGAGGTGCACGATACGGGCGTCAAGCCAAACACTTTGGGGAAGAAAGAAACTGGTG 1397 0.4209 MAVQEASPAPAPSAQVVGNAFVEQYYRILHQSPSLVHRFYHDSSFLSRADGNGVMTTVTTTQAINEKILSLNYEDYTAEIKTSDAQESYGKGVIVLVTGSLTGKDDVRRKFSQTFFLAPQDKGYYVLNDVFRFVEESNTSQSNSVPVNVINENAEAAPLPETDVIHTPEHHVADPPTSAEGKHLNNGAEGCDPLDNEEEGSVIDEEVVEPTTNLNQNNNIESGDSVPLVEDDAPRKSYASIVRKSYAASGPVYVPSRTAKVTSANTVGQLPPTAKYISAPEAVSSISENVPGSSDIHEEAEGHSIYVRNLPFNATVEQLEEVFKKFGSIKHDGIQVRSSKRGFCFGFVEFEELSSRQSALEASPITVGDRQAVIEEKRTTTRVSGSGRGRYSSGRSGFRNESFRNRWKYGGGRGYGRNEFRSQGELSGRPKGSAGQKGDSSQRVSQNGGARYGRQAKHFGEERNW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00561 465 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 446 - -
Bva05g00561 465 SUPERFAMILY RNA-binding domain, RBD 300 408 IPR035979 GO:0003676
Bva05g00561 465 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 446 IPR039539 -
Bva05g00561 465 MobiDBLite consensus disorder prediction 378 397 - -
Bva05g00561 465 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Bva05g00561 465 MobiDBLite consensus disorder prediction 414 465 - -
Bva05g00561 465 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 362 IPR000504 GO:0003723
Bva05g00561 465 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Bva05g00561 465 CDD RRM_SF 305 362 - -
Bva05g00561 465 Gene3D - 8 137 - -
Bva05g00561 465 MobiDBLite consensus disorder prediction 434 449 - -
Bva05g00561 465 SMART rrm1_1 304 375 IPR000504 GO:0003723
Bva05g00561 465 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 379 IPR000504 GO:0003723
Bva05g00561 465 CDD NTF2 13 135 IPR018222 -
Bva05g00561 465 Gene3D - 287 385 IPR012677 -
Bva05g00561 465 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00561 Bva-Chr5 2770969 2776177 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00561 K24983 - gmx:100801253 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01139 06 9041944 9046986 Bva05g00561 05 2770969 2776177 ECH
Bva05g00561 05 2770969 2776177 Bva05g00561 05 2770969 2776177 ECH