Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g01088 ATGACAGAGCGCAAAGTTCGTCAAGTTAATCAATTACGGGACATTTTTGCTCGGTTTGACATGGACTCCGATGGCAGCCTAACCATTCTAGAGCTGGCGGCGCTTCTCCGGTCGCTGGGACTGAAGCCTTCAGGGGATCAAATCCGTCTGCTACTAGCCAACATGGACGCCAATGGCAATGGCTCTGTGGAATTTGATGAGTTAGTGAATGCAATATTGCCGGACATGAATGAAGAGATATTGCTCAATCAAGAGCAGCTAACACAAGtttttaaaagctttgatCGTGATGGAAATGGGTATATATCGGCGGCCGAATTAGCCGGAGCAATGGCCAAAATGGGTCAGCCTCTCACATATAGAGAGCTCAGAGAGATGATCAAAGAGGCTGACATAGATGGTGATGGTGTGATtagttttaatgaatttaCCACTGTAATGGCTAGATCAGCTTCTGATGTCTTTGGCATTAAATTGTGGTG 482 0.4419 MTERKVRQVNQLRDIFARFDMDSDGSLTILELAALLRSLGLKPSGDQIRLLLANMDANGNGSVEFDELVNAILPDMNEEILLNQEQLTQVFKSFDRDGNGYISAAELAGAMAKMGQPLTYRELREMIKEADIDGDGVISFNEFTTVMARSASDVFGIKLW 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g01088 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Bva06g01088 160 SMART efh_1 86 114 IPR002048 GO:0005509
Bva06g01088 160 SMART efh_1 122 150 IPR002048 GO:0005509
Bva06g01088 160 SMART efh_1 11 39 IPR002048 GO:0005509
Bva06g01088 160 SMART efh_1 47 75 IPR002048 GO:0005509
Bva06g01088 160 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 5 158 - -
Bva06g01088 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Bva06g01088 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Bva06g01088 160 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Bva06g01088 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Bva06g01088 160 CDD EFh 86 148 IPR002048 GO:0005509
Bva06g01088 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Bva06g01088 160 PANTHER CALCIUM BINDING PROTEIN 5 158 - -
Bva06g01088 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Bva06g01088 160 Gene3D - 1 103 - -
Bva06g01088 160 Gene3D - 104 157 - -
Bva06g01088 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Bva06g01088 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Bva06g01088 160 SUPERFAMILY EF-hand 3 149 IPR011992 -
Bva06g01088 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g01088 Bva-Chr6 8768125 8769096 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g01088 8 159 EF-hand Containing Proteins AT1G18530 78.289 2.33e-87 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g01088 K13448 - zju:107418957 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01088 06 8768125 8769096 Bva05g00611 05 3026838 3027974 ECH
Bva06g01088 06 8768125 8769096 Bva06g01088 06 8768125 8769096 ECH