Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00611 ATGACAGAGCTTCATGACGATCAGCTTAATCAATTAAAGGACATTTTTACTCGGTTTGACATGGACTCCGACGGCAGCCTAACCATTCTAGAGCTCGCCGCGCTTCTCCGGTCGCTGGGGCTTAAGCCTTCGGGGGACCAAATCCATGTGCTATTAGCCAACATGGACGCCAATGGCAATGGCTTTGTGGAATTTGATGAATTGGTGAGTGCAATATTGCCAGACATTAATGAAGAAGCATTGCTCAATCAAGAACAGTTAACCCATGtttttaaatgctttgatcGTGATGGGAATGGGTACATATCGGCGGTGGAGTTAGCCGGAGCAATGGCCAAAATGGGTCAGCCCCTCACGTATAGAGAGCTCACAGAAATGATCAAAGAGGCTGACATAGACGGTGATGGTGTAATTAGTTTTCATGAATTTGCCAATGTAATGGGTAGATCAGCATCTGATTTCTTGGGCCTTGCGTTGTGCTG 482 0.4523 MTELHDDQLNQLKDIFTRFDMDSDGSLTILELAALLRSLGLKPSGDQIHVLLANMDANGNGFVEFDELVSAILPDINEEALLNQEQLTHVFKCFDRDGNGYISAVELAGAMAKMGQPLTYRELTEMIKEADIDGDGVISFHEFANVMGRSASDFLGLALC 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00611 160 CDD EFh 86 147 IPR002048 GO:0005509
Bva05g00611 160 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Bva05g00611 160 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Bva05g00611 160 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Bva05g00611 160 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
Bva05g00611 160 SMART efh_1 122 150 IPR002048 GO:0005509
Bva05g00611 160 SMART efh_1 11 39 IPR002048 GO:0005509
Bva05g00611 160 SMART efh_1 47 75 IPR002048 GO:0005509
Bva05g00611 160 SMART efh_1 86 114 IPR002048 GO:0005509
Bva05g00611 160 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Bva05g00611 160 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Bva05g00611 160 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Bva05g00611 160 Gene3D - 1 151 - -
Bva05g00611 160 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Bva05g00611 160 CDD EFh 11 72 IPR002048 GO:0005509
Bva05g00611 160 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Bva05g00611 160 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Bva05g00611 160 SUPERFAMILY EF-hand 2 147 IPR011992 -
Bva05g00611 160 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Bva05g00611 160 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00611 Bva-Chr5 3026838 3027974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00611 6 159 EF-hand Containing Proteins AT1G18530 79.221 2.60e-89 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00611 K13448 - zju:107418957 255.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01088 06 8768125 8769096 Bva05g00611 05 3026838 3027974 ECH
Bva05g00611 05 3026838 3027974 Bva05g00611 05 3026838 3027974 ECH