Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00678 ATGGCAACTGAGAGTCCAATTAGAATCTCAGAAGCCGGGGGAAAGTGGCCCTCCCTTAAAGAAGCTGCAAGTTATGGTTCACCATCTCGAAACATGGCTGCGGAGGATTTGGGCATGCTTTTGAAGGGGCATAGGTTCCATGGTGGTGGAAAAGATGTGGTTCCTAATCGAAGTGGTAGCGCACCCCCAAGCATGGAAGGTTCGTTTCATGCCATTGAAAACCTATTGTCCCAACCGAACACTGTCCAGAATGCAAGTTTGGCAAATCTGAATAGAGCTATGCAAATATATGATAGCAGTAAAGGTTCTCTACAATTGCCGCGAGGGACTCTTTCAACACACAAAGAGGAGTCTGAGGATGATCAATCATCGCTGCAACCATACGATGGGGAGTTAGATAAGACAAGTGGAATTTGGCATAGACAAGATGCAGATTCACCGGCATCGCGATACAAAAATGTGGTTGATTTAATACagcaAGATTTTCCACGTACTCCATCACCTGTATATAATAAGTCTATCACCGTAAGTCATAGAATGACAGAGGAAGCAGTTGACTTAGATGCTGGGCGCAGTTCTTCTCCTGATCCTCCAACAGTGGATGCTGCTAAATCTACCATAACTGCTGATACTGCAGCCCCTGTTGGAAGCTCATCATCTCTTGGATCCACAAGCAGCATGGGTTTGAATGATTTAGATGTTACAATGGTTGAATCTCAGTTGAAGGCtgttaatatatctaatctaCCAAGATCTGAAAACcagaaatatgaagaaaaacagaagCACAACTCTCAGAATAATTTGATGATGCACCAGATACATCAGCAACAAAACAATCCACATGAAGCTCTTAATGCCAATTCTCAAGGCATGCATTGTGCATATGTTGCCATGGATCAATTTCCTCATAGTCCCAGCAAGTTCTCTGATGTTCAGCCACTATTACAGTCATCTGGTTTTACACCTCCATTATATGCCACAGCAGCAGCTTATATGACCTCAGCAAATCCATTTTACACTAATTTGCAAGGCTCAGGCTTATATTCTCCACAGTATGGTGGAGGATACACATTCAATCCCACATCTATTCCTTCATATGTTGCTGCATTTCCTCCTCATGCTGCTGTACCAGTTGTTGTTGATGGAGCTGCTGGGTCTAGTTTTACTTCACAAACACCAGGAGCTTCAACTGCTTCACATGGAACTGATATCGGTCATGCAAACAAATTAGTTGGACAATTTGGATTTCCACTGCAGCCTTTTGCTGATCCTATTTACATGCAGTATCATCAACCAGCTTTTGGGGAAGGATATGGTTTTTCTGGTCAATTTGATTCATTGACTTCTAGAGCAAATGCGGGTAGCCAAATTGGTCATTTTGAACCACATAAAAGGCCCAACAATGGTGGTTATTTTGATGATCAGAAATTTCAACATCAGAGGAGTGAAGGCCATGCTAATGTGAACCTTAGAAGAGGTGGGCTAATGGTTCCTACTTACTTTGGACACTCACCAAACATGGGTTTTGTAATGCAGTATCCAACTTCCCCACTTCCTAGTCCAGTTTTGCCAGGATATCCGGAAGGTGGGACTGGCCTTTCAGGAGGGAGAAATGCAATGAAGTTTTCCCCAGCTTCTGGTAGAAACGCAGGTGCATTATCTGGATGGCAAGGTCAACGAGCTTTTGATGGTGCTCATGATCccaaaattgttaattttcttgaaGAGTTAAAATCTGGTAAAGGTCGCAGGTTTGAGTTATCTGATATTATTGGACATATTGTTGAATTTAGTGCTGATCAACATGGGAGTCGGTTCATCCAGCAAAAGTTGGAAAATTGTGGTGTTGAAGAGAAGGCACTTGTGTTCAAAGAGGTTCTTCCACATGCATCCAAATTAATGACTGATGTATTTGGTAACTATGTGATTCAAAAGTTTTTTGAGTACGGAAGCCCAGAGCAAAGTAAGGAACTTGCAAATCGACTGATTGGTCAGATATTGCCTTTGAGTCTACAGATGTATGGCTGTCGTGTAATCCAAAAGGCACTTGAGGTAATTGAGCTTGAACAGAAAGCTCAACTTGTCCGTGAGCTGGATGGTCATGTTATGAGATGCATTCGAGACCAGAATGGGAATCATGTCATACAGAAGTGTATAGAATGTATTCCAACCAAGAAAATTGAGTTTATAATATCTGCTTTTCGCAGTCAAGTTGCAACGTTATCCATGCATCCTTATGGTTGCCGTGTCGTACAGAGAGTTCTAGAGCATTGTACGGATGAGATTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCTGTCTGTACTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTATTGGAGAGAGGAAAGCCTCGTGAAAGGAGTCAAATCATCAACAAATTATCAGGACATATTGTGCAATTGAGCCAGCATAAGTTTGCATCAAATGTTGTCGAGAAATGTTTGGAGTATGGTGATGATACTGAAAGGGAGTTGTTAATTGCAGAAATTGTTGGgaatgatgaagaaaatgataatttacTGATAATGATGAAAGACCAGTTTGCCAATTATGTGGTCCAGAAGGTTCTTGAGATCTGTTCCGAACAGCAACGGGCAGTAATACTTTCTCGCACAAGAGCTCATGCTTCCGCTTTGAAGAAATACACATATGGGAAACACATTGTGGCTCGTTTAGAACAGCTGTTTGGAGAAGAGAATCAAACACCTGCATCATG 2759 0.4092 MATESPIRISEAGGKWPSLKEAASYGSPSRNMAAEDLGMLLKGHRFHGGGKDVVPNRSGSAPPSMEGSFHAIENLLSQPNTVQNASLANLNRAMQIYDSSKGSLQLPRGTLSTHKEESEDDQSSLQPYDGELDKTSGIWHRQDADSPASRYKNVVDLIQQDFPRTPSPVYNKSITVSHRMTEEAVDLDAGRSSSPDPPTVDAAKSTITADTAAPVGSSSSLGSTSSMGLNDLDVTMVESQLKAVNISNLPRSENQKYEEKQKHNSQNNLMMHQIHQQQNNPHEALNANSQGMHCAYVAMDQFPHSPSKFSDVQPLLQSSGFTPPLYATAAAYMTSANPFYTNLQGSGLYSPQYGGGYTFNPTSIPSYVAAFPPHAAVPVVVDGAAGSSFTSQTPGASTASHGTDIGHANKLVGQFGFPLQPFADPIYMQYHQPAFGEGYGFSGQFDSLTSRANAGSQIGHFEPHKRPNNGGYFDDQKFQHQRSEGHANVNLRRGGLMVPTYFGHSPNMGFVMQYPTSPLPSPVLPGYPEGGTGLSGGRNAMKFSPASGRNAGALSGWQGQRAFDGAHDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLENCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPEQSKELANRLIGQILPLSLQMYGCRVIQKALEVIELEQKAQLVRELDGHVMRCIRDQNGNHVIQKCIECIPTKKIEFIISAFRSQVATLSMHPYGCRVVQRVLEHCTDEIQCQFIVDEILESVCTLAQDQYGNYVTQHVLERGKPRERSQIINKLSGHIVQLSQHKFASNVVEKCLEYGDDTERELLIAEIVGNDEENDNLLIMMKDQFANYVVQKVLEICSEQQRAVILSRTRAHASALKKYTYGKHIVARLEQLFGEENQTPAS 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00678 919 CDD Pumilio 585 906 IPR033712 GO:0003723
Bva06g00678 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 698 733 IPR001313 GO:0003723
Bva06g00678 919 SUPERFAMILY ARM repeat 575 907 IPR016024 -
Bva06g00678 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 626 661 IPR001313 GO:0003723
Bva06g00678 919 MobiDBLite consensus disorder prediction 185 225 - -
Bva06g00678 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 807 842 IPR001313 GO:0003723
Bva06g00678 919 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 910 - -
Bva06g00678 919 MobiDBLite consensus disorder prediction 101 133 - -
Bva06g00678 919 Gene3D - 571 916 IPR011989 -
Bva06g00678 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 843 884 IPR001313 GO:0003723
Bva06g00678 919 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 570 910 IPR033133 GO:0003723
Bva06g00678 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 734 770 IPR001313 GO:0003723
Bva06g00678 919 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 910 - -
Bva06g00678 919 Pfam Pumilio-family RNA binding repeat 811 844 IPR001313 GO:0003723
Bva06g00678 919 Pfam Pumilio-family RNA binding repeat 631 662 IPR001313 GO:0003723
Bva06g00678 919 Pfam Pumilio-family RNA binding repeat 776 808 IPR001313 GO:0003723
Bva06g00678 919 Pfam Pumilio-family RNA binding repeat 708 733 IPR001313 GO:0003723
Bva06g00678 919 Pfam Pumilio-family RNA binding repeat 594 628 IPR001313 GO:0003723
Bva06g00678 919 Pfam Pumilio-family RNA binding repeat 666 699 IPR001313 GO:0003723
Bva06g00678 919 Pfam Pumilio-family RNA binding repeat 738 773 IPR001313 GO:0003723
Bva06g00678 919 Pfam Pumilio-family RNA binding repeat 855 883 IPR001313 GO:0003723
Bva06g00678 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 662 697 IPR001313 GO:0003723
Bva06g00678 919 MobiDBLite consensus disorder prediction 198 225 - -
Bva06g00678 919 SMART pum_5 849 884 IPR001313 GO:0003723
Bva06g00678 919 SMART pum_5 590 625 IPR001313 GO:0003723
Bva06g00678 919 SMART pum_5 807 842 IPR001313 GO:0003723
Bva06g00678 919 SMART pum_5 626 661 IPR001313 GO:0003723
Bva06g00678 919 SMART pum_5 734 770 IPR001313 GO:0003723
Bva06g00678 919 SMART pum_5 662 697 IPR001313 GO:0003723
Bva06g00678 919 SMART pum_5 698 733 IPR001313 GO:0003723
Bva06g00678 919 SMART pum_5 771 806 IPR001313 GO:0003723
Bva06g00678 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 590 625 IPR001313 GO:0003723
Bva06g00678 919 ProSiteProfiles Pumilio RNA-binding repeat profile. 771 806 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00678 Bva-Chr6 6589754 6597039 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00678 K17943 - gmx:100811036 1291.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00973 05 4955710 4962606 Bva06g00678 06 6589754 6597039 BWGD