Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00973 ATGGCAACTGAGAGTCCAATTAGAATCTCAGAAGCTGGGGGAAAGTGGCCCTCCTCAAAAGAAGCTGCAAGTTATGGTTCACCATCTCAAAACATGGCTACAGAGGATTTGGGTATGCTTTTGAAGGGGCATAGGTTCCATGTCAGTGGAAAAGATGTGGTTCCTAACCGGAGTGGCAGCGCACCCCCATGCATGGAAGGTTCATTTTATGCCATAGAAAACCTATTATCCCGGCAGAACACTGTTCAGAATGCAAGTTTGGAAAATCTGAATAGATCTATGAAAAAATATGATAGTAATAAAGGTTCTCTACAATTGCTGCAAGGGACACTTTCAACACACAAGGAGGAGCCTGAGGATGATCAATCACCCTTGCAACCAGAGTTAGATAAGACAAATGGAATTTGGCATAGACAGGATGTGGATCCACTGGCATCTCAGTACAAAAATGTGGTTGATTTAATTCAgcAAGATTTTCCACGTACTCCATCACCTGTATATAGTAAGTCTATCACCATAAGTCATGGAATGCCAGAGGAAGCAGTTGATTTAGATGCTGGGTACAGTTCTTCTCATGATCCCCCTGTCACCACACTAGATGCTGCTAAATCTTCTATAACTGCTGGTACCCCAGCCCCTGTTGCAAGCTCATCATCTCTTGGATCCACAAGCAGCATGGGTTTGACGAATTTAGATGTTACAATGGTTGAATCTCAACTGAAGGCTGTTAACATATCTAATGTACCGAGATCAGAAAGCcagaaatatgaagaaaaatggaagcaCAACTCTCAGAATAATTTGATGATGCACCAGATACACCAGCAGCAAATTAATCCATGTGAAGCTCCTAATGCCAATTCCCAAGGACTAAAGTCTGCATATGTTTCTATGGATCAATTTCCTCATAATCCTAGCAAGTTCTCTGATGTTCAGCCACTACTGCAGTCATCTGGGTTTACACCTCCATTATATGCCACAGCAGCAGCTTATATGGCCTCCACAAATCCATTTTACTCTAATTTGCAATGCTCAGGCTTATATTCTCCACAATATGTAGGAGGATACACGTTTAATCCCCCAACTATTCCTCCATATGTTGCTACATATCCTCCTCATGCTGCTGTACCAGTTGTTGATGGAGCTGCTGGGTCTAGTTTTACTGGACAAACACCAGGAGTTTCAACTGCTTCGCATGGAACTAATATGGTGCatgcaaataaattagttGGACAATTTGGATTTCCATTGCAGCCTTCTTTTGCTGATCCTGTTTACATGCAATATCATCAACAACCTTTTGGGGAAGGATATGGTTTTTCTGGTCATTTTGACCCCTTGGCATCTAGAGCAAGTGCAGGTAGCCAAATTGGTCATTTTGAACCACAGAAAAGGCCCAACAATGGCAGTTATTTGGATGACCAGAAATTTCAACATCAGAGGAGTGAAAGCCGTACTAATATGAACTCAAGAAGGGGTGGGCTAGTGGTTCCTAGCTACTTTGGACACTCACCAAACACGGGTTTTGTAATGCAGTATCCAACTTCCCCACTTCCTAGTCCACTTCTGCCAGGGTATCCAGAAGGTGGAACTGGCCCTGTAGTTGGGAGAAATGAGATGAAGTTTTCCCCAGCTTCTGGTAGAAATGCAGCTCTATTATCTGGATGGCAAGGTCAACGAGTCTTTGATAGTGCTTATGATCCCAAAATTGTTAACTTTCTTGAAGAGTTAAAATCTGGCAAAGGTCGCAGGTTTGAACTATCTGATATTATTGGACATATTGTTGAATTTAGTGCTGATCAACATGGGAGTCGGTTTATCCAGCAAAAGCTGGAAAATTGTGGTGTTGAAGAGAAGGCACTTGTGTTCAAAGAGGTTCTTCCACATGCATCCAAATTAATGACTGATGTATTTGGTAACTATGTAATTCAAAAgTTTTTTGAGTATGGAAGTCCGGATCAAAGGAAGGAACTTGCAAATCAACTGACTGGTCAGATATTACCTTTAAGTCTACAGATGTATGGATGTCGGGTAATCCAGAAGGCACTTGACGTTATTGAACTGGAACAGAAAGCTCAACTTGTTCGTGAGCTGGATGATCATGTCATGAGATGCATTCGTGATCAAAATGGGAATCACGTTATACAGAAGTGTATTGAATGCATTCCAACCAAGAAAATTGGGTTTATAATATCTGCTTTTCGTGGTCAAGTTGCTACGTTATCTATGCATCCTTATGGTTGCCGTGTTGTACAGAGAGTATTAGAGCATTGCACAGATGAGGTTCAATGTCAGTTTATTGTGGATGAAATCTTGGAGTCTGTCTGTACTCTTGCTCAGGACCAGTATGGTAATTATGTTACCCAGCATGTCTTGGAGAGAGGAAGGCCTCATGAAAGGAATCAAATCATTAACAAGTTATCAGGACATATTGTGCAATTGAGCCAGCATAAATTTGCATCAAATGTTATTGAGAAATGTTTGGAGCATGGTGATAGTACTGAACGGGAGTTGTTAATTGCAGAAATTGTTGGGcatgatgaagaaaatgataatttactgataatgatgaaagaccaatTTGCCAATTATGTGGTCCAGAAGGTTCTTGAGATCTGTTCTGAACATCAACGAGCAGTGTTACTTTCTCGCATAAGAGCTCATGCTCATGCTTTGAAGAAATACACTTACGGGAAACACATTGTGGCTCGTTTAGAACAGCTGTTCGGAGAAGAGAATCAAACGCCTGGATCATG 2756 0.4035 MATESPIRISEAGGKWPSSKEAASYGSPSQNMATEDLGMLLKGHRFHVSGKDVVPNRSGSAPPCMEGSFYAIENLLSRQNTVQNASLENLNRSMKKYDSNKGSLQLLQGTLSTHKEEPEDDQSPLQPELDKTNGIWHRQDVDPLASQYKNVVDLIQQDFPRTPSPVYSKSITISHGMPEEAVDLDAGYSSSHDPPVTTLDAAKSSITAGTPAPVASSSSLGSTSSMGLTNLDVTMVESQLKAVNISNVPRSESQKYEEKWKHNSQNNLMMHQIHQQQINPCEAPNANSQGLKSAYVSMDQFPHNPSKFSDVQPLLQSSGFTPPLYATAAAYMASTNPFYSNLQCSGLYSPQYVGGYTFNPPTIPPYVATYPPHAAVPVVDGAAGSSFTGQTPGVSTASHGTNMVHANKLVGQFGFPLQPSFADPVYMQYHQQPFGEGYGFSGHFDPLASRASAGSQIGHFEPQKRPNNGSYLDDQKFQHQRSESRTNMNSRRGGLVVPSYFGHSPNTGFVMQYPTSPLPSPLLPGYPEGGTGPVVGRNEMKFSPASGRNAALLSGWQGQRVFDSAYDPKIVNFLEELKSGKGRRFELSDIIGHIVEFSADQHGSRFIQQKLENCGVEEKALVFKEVLPHASKLMTDVFGNYVIQKFFEYGSPDQRKELANQLTGQILPLSLQMYGCRVIQKALDVIELEQKAQLVRELDDHVMRCIRDQNGNHVIQKCIECIPTKKIGFIISAFRGQVATLSMHPYGCRVVQRVLEHCTDEVQCQFIVDEILESVCTLAQDQYGNYVTQHVLERGRPHERNQIINKLSGHIVQLSQHKFASNVIEKCLEHGDSTERELLIAEIVGHDEENDNLLIMMKDQFANYVVQKVLEICSEHQRAVLLSRIRAHAHALKKYTYGKHIVARLEQLFGEENQTPGS 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00973 918 MobiDBLite consensus disorder prediction 458 491 - -
Bva05g00973 918 MobiDBLite consensus disorder prediction 1 30 - -
Bva05g00973 918 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 569 909 IPR033133 GO:0003723
Bva05g00973 918 SUPERFAMILY ARM repeat 574 906 IPR016024 -
Bva05g00973 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 842 883 IPR001313 GO:0003723
Bva05g00973 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 770 805 IPR001313 GO:0003723
Bva05g00973 918 SMART pum_5 625 660 IPR001313 GO:0003723
Bva05g00973 918 SMART pum_5 661 696 IPR001313 GO:0003723
Bva05g00973 918 SMART pum_5 770 805 IPR001313 GO:0003723
Bva05g00973 918 SMART pum_5 697 732 IPR001313 GO:0003723
Bva05g00973 918 SMART pum_5 848 883 IPR001313 GO:0003723
Bva05g00973 918 SMART pum_5 806 841 IPR001313 GO:0003723
Bva05g00973 918 SMART pum_5 589 624 IPR001313 GO:0003723
Bva05g00973 918 SMART pum_5 733 769 IPR001313 GO:0003723
Bva05g00973 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 733 769 IPR001313 GO:0003723
Bva05g00973 918 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 52 909 - -
Bva05g00973 918 Pfam Nucleic acid binding protein NABP 238 588 IPR012940 -
Bva05g00973 918 CDD Pumilio 584 905 IPR033712 GO:0003723
Bva05g00973 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 806 841 IPR001313 GO:0003723
Bva05g00973 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 625 660 IPR001313 GO:0003723
Bva05g00973 918 Gene3D - 570 915 IPR011989 -
Bva05g00973 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 589 624 IPR001313 GO:0003723
Bva05g00973 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 697 732 IPR001313 GO:0003723
Bva05g00973 918 Pfam Pumilio-family RNA binding repeat 665 698 IPR001313 GO:0003723
Bva05g00973 918 Pfam Pumilio-family RNA binding repeat 737 772 IPR001313 GO:0003723
Bva05g00973 918 Pfam Pumilio-family RNA binding repeat 707 727 IPR001313 GO:0003723
Bva05g00973 918 Pfam Pumilio-family RNA binding repeat 775 807 IPR001313 GO:0003723
Bva05g00973 918 Pfam Pumilio-family RNA binding repeat 630 662 IPR001313 GO:0003723
Bva05g00973 918 Pfam Pumilio-family RNA binding repeat 593 627 IPR001313 GO:0003723
Bva05g00973 918 Pfam Pumilio-family RNA binding repeat 854 885 IPR001313 GO:0003723
Bva05g00973 918 Pfam Pumilio-family RNA binding repeat 810 843 IPR001313 GO:0003723
Bva05g00973 918 ProSiteProfiles Pumilio RNA-binding repeat profile. 661 696 IPR001313 GO:0003723
Bva05g00973 918 PANTHER PUMILIO HOMOLOG 6, CHLOROPLASTIC 52 909 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00973 Bva-Chr5 4955710 4962606 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00973 K17943 - gmx:100811036 1308.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00973 05 4955710 4962606 Bva06g00678 06 6589754 6597039 BWGD