Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00560 ATGTTGTCAAAATTTGAAGCCCGAAAGAAGACTGCTGAAGGTTCAGGTAGTGGGAAGTTGTTGAAAGAGATTGGCACTATAAGCAAAGCTCTGTACCTGGATAAATCCTCCTCAAAGAACTTACTCGCTGCAGCTAATGCTCGACCCAAATCCAGTGGAAAACCCAACATACATGATGCCAAATCAAACTCCAAAGGCAGTAATGAAGATCCTTCACGCAAGGATAAGAAGTCCATATGGAATTGGAGGCCATTGAAGGCCTTTTCGCATATCCGAAATCGAAGGTTTAACTGTTGTTTTTCACTCCAAGTCCATTTGATCGAAGGGTTACCTTCCACATTTGATGATACTAGCCTTTGCGTGTACTGGAAGAGGCGAGATGGGGTTTTGGTGACTCGTCCAGCCAAGGTAGTTCAACACACGGTTGAATTTGAAGAGAAGTTGACTTACACTTGCTCAGTTTATGGCAGTAGGAATGGACCACACCATTCAGCAAAATATGAAGCAAAGCATTTTTTGCTCTATGCTTCTGTTGTTGGTGCACCAGAACTTGATTTGGGAAAGCACCGGGTAGATCTCACACGGTTGCTCCCCCTTACACTGGAAGAACTTGAGGAGGAGAAAAGCTCAGGGAAGTGGACTACAAGTTTTAGATTATCAGGAATGGCCAGAGGTGCTGTACTGAACGTCAGTTTTGGGTATGCGGTGGTTGGTGATAACAGTAATGCTACCAGAGACAACCATAATGCTCCTAATGCATCGACTTTGAGGCAGAATAATCTGGGTTTGACAAAACCAGCTATTAAATCCAGTCAAGCCGATGGGGAGATCAGCATGATGCGTATTGGAAGTCTGCCAAAATTTTCCGGTTCATATTCTTCTCGAATTGAAGATGAGGTAAAGGATCTTCATGAGGTTTTGCCAACATCAACGTCGGAATTAGCTAGTTCAATAGACATCTTATATCAGAaatttgatgaagaaaaaacatGTAGCAGAGGGCATGATAAACCTGAATTTGATGTATTCACAGAAAATCTCGAGCCCAACAAACCAGATGCCCATCCTTTACCTGATcctggaaaaggaaattttgaagattgTGAAGGGAATGAAGTAATCACATGTAATCCTGTGCATGAAGAACCCGAACTCAATGTGTTCCAAGGAAATCTTGAGCCAGCCAAATCAAATGTCTGTCCCTCAGCTCATTCTAGAAAAGAGAATCCTGAAGAGTGTGAAGGTAATGAATTTTCTGTTGTTGATCAGGCCATAGAATTGTCATCGAATGAACCTGTTAAAGTAGACGAGTCCTCTGTAAAGATTGTTGATGATGCTTCTTATATTGATAGCACCTGTACTATTGGTACTGTTGTTATAGAGCCATCTTCTGAAGACAGTGTTGAACACGAGCCCCTTGATTTGGATAATGACAGTTCTAAAGAAAAGGCTGTGGTTCGTGAAAACACTAATGAGGATAACTTATATACTAAAGAAATGCTCATGAAAGAATTAGAATCAGCCTTAAATAGTATCTCAGATCTGGAGATGGTGGCACTGGAATCTCCCAATCAAGAGAAGTATATGAAAGACAAATCTGAGTCTGAATATAAATTGCGGAAGTCACACAGCTTGGATGATGTTACAGAATCAGTTGCCAGTGAATTTTTAAGCATGTTAGACATGGACCATAGTTCATCTGGCTTGAGTTCTGAAAGTGAGCCTGAGTCCCCCAGAGAGCGTCTATTAAGACAATTCGAGGAGGAGGCTTTGGCTGAGGGCTTCTCTTTATATGATTTTGACATTGGCAATGAGGGTGAGGTAGATGATGGCTACAATGCTTCTATTAGATCTGAGCAGCGGCACTTCTCTGAGGGTCTCAATAATTTCTCATCCCTTTTAAAAGATCTGCAGGACGGACCTCCGGTTGAGTCTCAGGAAGCAAGGAGCAAAGAGAGGGCTAAGATACTAGAAGATTTGGAAACAGAAGCTTTAATGCGCGAGTGGGGTATGAATGAGGAGGCTTTTCTGCATTCTCCACCCAAGAACCCTCCAGGTTTTGGAAGTCCAATTGATTTACCCCCTGAAGAGTCTCTTATATTGCCTTCTCTGGGAGAGGGGTTAGGTCCTTATCTTCAGACAAAAGATGGAGGGTTTTTGCGGTCTATGAACCCATCACTTTTCAAGAATGCTAAAGCTGGTGGGAGTTTAGTCCTACAGGTTTCAAACCCTGTTGTGGTTCCTGCTGAAATGGGTTCTGGGATAATGGAGATTCTGCAGGGTTTGGCTTCAGTGGGAATTGAAAAGCTCTCCATGCAGGCAAACAAATTAATGCCTCTGGAGGATATCACAGGAAAGACAATGCAACAAGTAGCGTGGGAAGCTATGCCTGTCTTAGAGGGAGCGGAGAGgCAATGTTTGTTGCCACACGATTTGGTAACGGGGCAAGATAACACTACTTCTGTGCAAGCGGGATTGAAAGGAGCATCGTCTGGATCAAAGTCTGATAAGTTTAGTTCAAGCTCAGTAAGTAACCAGACAGGCTCAGAGTTTGTCTCTTTGGAAGATCTTGCTCCGCTGGCTATGGATAAAATCGAAGCACTTTCAGTCGAGGGATTGAGAATACAATCTGGCATGTCAGATGAGGATGCACCATCAAACATCATTGCACAGTCCATTGGGGATATTTCAGCTCTCCAGGGCAAGGGTGTCAGTGTTAGTGGGTCCCTTGGCATGGATGGTGCTGCTGGTTTGCagttgttagatataaaagaCAACGGCGCTAGTGTTGATGGGATAATGGGCCTATCGTTAACTCTTGATGAATGGATAAGACTGGATTCTGGTGAGATTGATGATATGGATAACATCAGTGAACATACTTCCAGAATTCTTGCAGCTCATCATGCTAACTCTTTTGACTTAATTCGTGGAAGTTCAAAGGGAGATAGGAAACGAGGAAAAGGCTCTGGCAGAAAATGTGGTTTGTTGGGAAATAATTTCACAGTAGCGTTAATGGTGCAACTTCGTGATCCTCTGAGAAATTTTGAGCCTGTTGGTACACCAATGCTTTCTCTTATACAAGTTGAGAGAGTGTTTCTTCCTCCGAAACCAAAAATCTATACCACCGTGTTTGAGGCAAGGGAAAACAAGGAAGAGAACGACGAGTCTGAAACAGTGGTGAAGGTGGAGATGAAGGATGACAAAAAGGAACAGAAAAGCTCTGATGATGATGGTATTCCTCAATACAGAATTACCGAAGTCCATGTTGCAGGTCTGAAGGCTGAACCTCGCAAGACTAAGCTTTGGGGCACTTCAAGCCAGCAACAATCTGGTTCCCGCTGGTTACTCGCTAATGGGATGGCtaagaacaaaaatcaaataggGAAGTCAAAGATAGCATCTAAATCTGGTGGTCCGGCCACGACAAAGGTGCTGCCTGGTGACACTTTGTGGAGCATATCATCTCGTGTTCTTGGTAGTGGAGCAAGATGGAAGGAACTGGCTACTGTAAATCCACATATAAGAAACCCCAATATCGTTATAAAGAATGAGACCATAAAATTGCGCTG 3572 0.425 MLSKFEARKKTAEGSGSGKLLKEIGTISKALYLDKSSSKNLLAAANARPKSSGKPNIHDAKSNSKGSNEDPSRKDKKSIWNWRPLKAFSHIRNRRFNCCFSLQVHLIEGLPSTFDDTSLCVYWKRRDGVLVTRPAKVVQHTVEFEEKLTYTCSVYGSRNGPHHSAKYEAKHFLLYASVVGAPELDLGKHRVDLTRLLPLTLEELEEEKSSGKWTTSFRLSGMARGAVLNVSFGYAVVGDNSNATRDNHNAPNASTLRQNNLGLTKPAIKSSQADGEISMMRIGSLPKFSGSYSSRIEDEVKDLHEVLPTSTSELASSIDILYQKFDEEKTCSRGHDKPEFDVFTENLEPNKPDAHPLPDPGKGNFEDCEGNEVITCNPVHEEPELNVFQGNLEPAKSNVCPSAHSRKENPEECEGNEFSVVDQAIELSSNEPVKVDESSVKIVDDASYIDSTCTIGTVVIEPSSEDSVEHEPLDLDNDSSKEKAVVRENTNEDNLYTKEMLMKELESALNSISDLEMVALESPNQEKYMKDKSESEYKLRKSHSLDDVTESVASEFLSMLDMDHSSSGLSSESEPESPRERLLRQFEEEALAEGFSLYDFDIGNEGEVDDGYNASIRSEQRHFSEGLNNFSSLLKDLQDGPPVESQEARSKERAKILEDLETEALMREWGMNEEAFLHSPPKNPPGFGSPIDLPPEESLILPSLGEGLGPYLQTKDGGFLRSMNPSLFKNAKAGGSLVLQVSNPVVVPAEMGSGIMEILQGLASVGIEKLSMQANKLMPLEDITGKTMQQVAWEAMPVLEGAERQCLLPHDLVTGQDNTTSVQAGLKGASSGSKSDKFSSSSVSNQTGSEFVSLEDLAPLAMDKIEALSVEGLRIQSGMSDEDAPSNIIAQSIGDISALQGKGVSVSGSLGMDGAAGLQLLDIKDNGASVDGIMGLSLTLDEWIRLDSGEIDDMDNISEHTSRILAAHHANSFDLIRGSSKGDRKRGKGSGRKCGLLGNNFTVALMVQLRDPLRNFEPVGTPMLSLIQVERVFLPPKPKIYTTVFEARENKEENDESETVVKVEMKDDKKEQKSSDDDGIPQYRITEVHVAGLKAEPRKTKLWGTSSQQQSGSRWLLANGMAKNKNQIGKSKIASKSGGPATTKVLPGDTLWSISSRVLGSGARWKELATVNPHIRNPNIVIKNETIKLR 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00560 1190 Pfam LysM domain 1145 1181 IPR018392 -
Bva06g00560 1190 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1189 IPR039614 -
Bva06g00560 1190 ProSiteProfiles LysM domain profile. 1141 1189 IPR018392 -
Bva06g00560 1190 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 1 1189 - -
Bva06g00560 1190 CDD LysM 1144 1182 IPR018392 -
Bva06g00560 1190 MobiDBLite consensus disorder prediction 464 489 - -
Bva06g00560 1190 MobiDBLite consensus disorder prediction 822 845 - -
Bva06g00560 1190 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 93 240 IPR019448 -
Bva06g00560 1190 MobiDBLite consensus disorder prediction 1049 1081 - -
Bva06g00560 1190 Coils Coil 498 518 - -
Bva06g00560 1190 MobiDBLite consensus disorder prediction 43 75 - -
Bva06g00560 1190 MobiDBLite consensus disorder prediction 463 489 - -
Bva06g00560 1190 ProSiteProfiles C2 NT-type domain profile. 88 236 IPR019448 -
Bva06g00560 1190 Gene3D LysM domain 1133 1190 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00560 Bva-Chr6 5909534 5914105 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00560 - - mtr:MTR_2g040970 1436.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01083 05 5561169 5565040 Bva06g00560 06 5909534 5914105 BWGD
Bva06g00560 06 5909534 5914105 Bva06g00560 06 5909534 5914105 ECH