Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01083 ATGAAAGCTGAATCTGAATATAAATTGCGAAAGTCACGTAGCTTGGATGATGTTACAGAATCAGTTGCCAGTGAATTCTTAAGCATGCTAGGGATGGACCATAGTCCATCTGACCTTAGTTCCGAAAGTGAGCCTGAGTCCCCCAGAGAGCGTCTGTTAAGACAATTTGAGAATGAGGCTTTGACTGAGGGTTTCTCTTTATATGATTTTGACGTTGGCAATGAGGGTGAGGCAGATGATGGCTACAATGCTTCTATGGGATCTGAGCAGTGGAACTTCTCTGAGGGTCTCAATTTCTCATCCCTGTTGCAAGATTTGTGGGAGAGGCCTCCAGTTGAGTCTCAGGAAGCAAGGAGCAAAGAGAGGGCAAAGATGCTAGAAGATCTGGAAACAGAAGCCTTAATGCGTGAGTGGGGTTTGAAAGAGGAGGCTTTTCAGCATTCTCCACCCAATAACTCTTCAGGTTTTGGAAGTCCAATTGATTTACCACCTGAAGAGCCTTTTACATTGCCTCCTCTTGGAGAGGGGTTGGGCCCTTTTCTTCAGACAAAAGATGGAGGATTTTTGCGGTCTATGAATCCATCACTTTTCAGGAATGCTAAAGGTGGTGGGAGCTTGGTCATGCAGGTTTCAAACCCTGTTGTCGTTCCTGCAGAAATGGGTTCTGGGATAATGGAAATTTTGCAGGGTTTGGCTTCAGTAGGAATTGAAAAGCTTTCCATGCAGGCAAACAAATTAATGCCTCTGGAGGATATCACAGGGAAGACAATGCAACAAGTAGCATGGGAAGCTATGCCTGTCTTAGAGGGAGTGGGGAGGCAATGCTTTCTGCCACAAGATTTGGTAAAGGGGCAAGATACTAGTGTTCAAGGGGGATTGAAAGGAGCACCATCTCGGTCAAAGTCTGATAAGTTTAGTCCAAGCACTGTCGGCAACCAGACTGGCTCAGAGTTTGTTTCTTTGGAAGATCTTGCCCCATTGGCTATGGATAAAATTGAAGCACTTTCAATTGAGGGTTTGCGAATACAATCTGGCATGTCAGATGAGGACGCACCATCTAACATCATTGTACAGTCCATTGGGGATATTTCAGCTATCCAGGGCAAGGGGGTCAATGTTAGCGGGTCCCTTGGCCTGGATGGAGCTGCTGGTTTGCAGTTGTTGGATATAAAACACAATGACGATAGTGTTGATGGGATAATGGGCTTATCATTATCTCTTGATGAATGGATAAGACTGGATTCTGGTGAGATTGATGATATGGATAACATCAGCGAGCATACTTCCAGAATTCTTGCTGCTCATCATGCTAACTCTTTTGACTTTATTCGTGGGAGTTCAAAAGGAGAGCGAAAACGAGGAAAAGGCTCTGGCAGAAAATGTGGTTTGCTGGGAAATAATTTCACAGTAGCATTAATGGTGCAACTACGTGACCCTCTGAGAAATTATGAGCCTGTTGGTACTCCAATGCTTTCTCTTATACAAGTTGAGAGAGTATTTGTTCccccaaaaccaaaaatttataCCACCTTGTTTGAGTTAGGGAaaaacaaggaagagaatGATGAGTCTGAAACAGCGGTGAAGGTGGAGTTGAAGGAtgacaaggaagagaaaagctCTGAAGATGATGGCATTCCCCAATTCAAAATTACTGAAGTCCATGTTGCAGGTGTGAAGACTGAGCCTCGCAAGCCTAAGCTCTGGTTCTGGGGTTCTTCAAGCCAGCAACAATCTGGATCCCGCTGGTTGGTTGCTAATGGGATGGGTAAGAACAGCAAAAATTCCATGATGAAATCAAAGATAGCGTCTAAATCTGGTGCTCCGGCTACGACAAAAGTGCTGCCTGGTGATACACTTTGGAGCATATCATCTCGTGTTCTTGGTAGTGGAGCAAGATGGAAGGAGTTGGCTGCGCTGAACCCCCATATAAGAAACCCCAATGTCATTATAAGAAATGATACTTTAAGATTGTGCTG 1979 0.4351 MKAESEYKLRKSRSLDDVTESVASEFLSMLGMDHSPSDLSSESEPESPRERLLRQFENEALTEGFSLYDFDVGNEGEADDGYNASMGSEQWNFSEGLNFSSLLQDLWERPPVESQEARSKERAKMLEDLETEALMREWGLKEEAFQHSPPNNSSGFGSPIDLPPEEPFTLPPLGEGLGPFLQTKDGGFLRSMNPSLFRNAKGGGSLVMQVSNPVVVPAEMGSGIMEILQGLASVGIEKLSMQANKLMPLEDITGKTMQQVAWEAMPVLEGVGRQCFLPQDLVKGQDTSVQGGLKGAPSRSKSDKFSPSTVGNQTGSEFVSLEDLAPLAMDKIEALSIEGLRIQSGMSDEDAPSNIIVQSIGDISAIQGKGVNVSGSLGLDGAAGLQLLDIKHNDDSVDGIMGLSLSLDEWIRLDSGEIDDMDNISEHTSRILAAHHANSFDFIRGSSKGERKRGKGSGRKCGLLGNNFTVALMVQLRDPLRNYEPVGTPMLSLIQVERVFVPPKPKIYTTLFELGKNKEENDESETAVKVELKDDKEEKSSEDDGIPQFKITEVHVAGVKTEPRKPKLWFWGSSSQQQSGSRWLVANGMGKNSKNSMMKSKIASKSGAPATTKVLPGDTLWSISSRVLGSGARWKELAALNPHIRNPNVIIRNDTLRLC 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01083 659 ProSiteProfiles LysM domain profile. 610 658 IPR018392 -
Bva05g01083 659 Coils Coil 112 132 - -
Bva05g01083 659 Pfam LysM domain 614 656 IPR018392 -
Bva05g01083 659 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 658 IPR039614 -
Bva05g01083 659 MobiDBLite consensus disorder prediction 518 543 - -
Bva05g01083 659 MobiDBLite consensus disorder prediction 144 164 - -
Bva05g01083 659 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 2 658 - -
Bva05g01083 659 MobiDBLite consensus disorder prediction 29 51 - -
Bva05g01083 659 MobiDBLite consensus disorder prediction 286 312 - -
Bva05g01083 659 CDD LysM 613 658 IPR018392 -
Bva05g01083 659 Gene3D LysM domain 602 659 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01083 Bva-Chr5 5561169 5565040 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01083 - - gmx:100815106 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01083 05 5561169 5565040 Bva06g00560 06 5909534 5914105 BWGD
Bva05g01083 05 5561169 5565040 Bva05g01083 05 5561169 5565040 ECH