Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva06g00533 ATGATCCTCCCCATAGTCTTCATCTTTTCTCTCCTGTCGTTCTCCCATGCTTTGGTGCAAGATTTCTGTGTTGCAGATTATAAAGGTCCGGTTGGCCCAGCAGGATACTCATGCAAGAAGCCTGCAAAGGTCACTGCAGATGATTTTGCTTTCTCTGGCCTGGGTATTGCTGGTAACACCTCAAATATCATCAAAGCTGCTGTGACCCCTGCATTTGATGCTCAGTTTCCTGGTCTCAATGGCCTTGGCCTTTCTGCTGCTCGTTTAGACTTGGCAGCAGGAGGAGTTATACCATTGCATACACATCCTGCGGCTTCAGAACTCCTTGTTGTCGGGCTAGGGACAATTCTTGCTGGATTCATTTCATCTGACAACACTGTCTACCTGAAAACTCTCAAGACGGGAGACATCATGGTATTCCCACAAGGTTTGCTGCACTTCCAGCTCAATAAGGGTGGTAGTCCAGCCTTAGGATATGTAACCTTCAGCAGTCCCAACCCTGGTCTACAAATTCTGGACTTTGCATTGTTCAAGAGTTCTTTCCCTAGTAAATTGATAGAGGAAACCACTTTTCTTGATGAAGCTCAGGTGAAGAAGCTCAAAGCTGTTCTTGGAGGATCAGGTTA 626 0.4633 MILPIVFIFSLLSFSHALVQDFCVADYKGPVGPAGYSCKKPAKVTADDFAFSGLGIAGNTSNIIKAAVTPAFDAQFPGLNGLGLSAARLDLAAGGVIPLHTHPAASELLVVGLGTILAGFISSDNTVYLKTLKTGDIMVFPQGLLHFQLNKGGSPALGYVTFSSPNPGLQILDFALFKSSFPSKLIEETTFLDEAQVKKLKAVLGGSG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva06g00533 208 PRINTS Germin signature 163 178 IPR001929 GO:0030145
Bva06g00533 208 PRINTS Germin signature 100 120 IPR001929 GO:0030145
Bva06g00533 208 PRINTS Germin signature 130 150 IPR001929 GO:0030145
Bva06g00533 208 Pfam Cupin 55 198 IPR006045 -
Bva06g00533 208 CDD cupin_OxOx 15 204 - -
Bva06g00533 208 SUPERFAMILY RmlC-like cupins 19 202 IPR011051 -
Bva06g00533 208 SMART Cupin_1_3 52 198 IPR006045 -
Bva06g00533 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 6 204 - -
Bva06g00533 208 Gene3D Jelly Rolls 16 207 IPR014710 -
Bva06g00533 208 ProSitePatterns Germin family signature. 95 108 IPR019780 GO:0030145
Bva06g00533 208 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 1 6 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva06g00533 Bva-Chr6 5776640 5777751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva06g00533 1 207 Miscellaneous Gene Families AT5G20630 70.673 7.72e-99 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva06g00533 - - gmx:100800387 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01109 05 5719974 5720914 Bva06g00533 06 5776640 5777751 BWGD
Bva06g00533 06 5776640 5777751 Bva06g00533 06 5776640 5777751 ECH