Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01048 ATGTCGAGGCTGCTTCGGAACACTTCCCTCCTGAAACGCTCTCTATTCGACTCTGAGGGCTTCAAACGAGGAATATTGGGCACATCTCAAATCTTCAACTTTTCATCTAAAGGTAGAAGGGGTTCTAAATCAGATGGAAGTGATTCAAATGAAGAGAACATGTCAAAGAAAGATTTGGCCTTACAACAAGCTTTGGATCAAATCACTTCTTCATTTGGAAAAGGTTCTATCATGTGGCTTGGTCGCTCTGTCTTACCAAAACAAGTACCTGTGGTGTCAAGTGGTTCTTTGGCTCTTGATATAGCTTTAGGAGTTGGTGGATTTCCAAAGGGACGTGTTGCGGAAATATACGGTCCTGAGGCTTCTGGGAAAACGACTCTTGCTTTACATGTGATTGCGGAAGCACAGAAGCAAGGAGGCTATTGTGTTTTTGTTGATGCCGAGCATGCACTTGATCAAGCCCTTGCAGAGTCTATTGGTGTAAATACTCAGAATTTGCTTCTCTCGCAACCTGATTGTGGTGAACAGGCCCTTAGTCTTGTGGACACCTTAATACGGAGTGGCTCGGTTGATGTGATCGTTGTCGACAGTGTAGCTGCCCTTGTTCCTAAAGGTGAACTTGATGGTGAGATGGGAGATGCTCACATGGCAATGCAGGCCAGGTTGATGAGCCAGGCACTTCGTAAATTGAGCCACTCTTTATCAATGTCACAGTGTATATTGATTTTTGTAAATCAGGTGAGGTCAAAGCTTTCTACTTTTGGGGGTTTTGGTGGGCCAACTGAAGTTACTTGTGGTGGTAATGCTTTAAAGTTCTATGCTTCAGTGCGGCTAAACATCAAACGAATAGGGTTTTTGAAGAAGGGTGAAGAGATCCTAGGAAGCCAGGTTCTTGTTAAGGTTGTGAAGAACAAGCTTGCCCCTCCATTTAAAACTGCGCAATTTGAGCTTGAGTTTGGCAAGGGTATAAGCAGAGAATCAGAGATTATAGATTTGGCCCTAAAACACAAATTTATCTCGAAGTCTGGTGCATATTTTCGCTATAACGATCAGACTTTCCATGGCAAGGATGCTTTTAAGAGGTTCCTAGCTGAGAATTCTAACATGTTAGAAGAACTTACTATAAAACTCAGGGAGAAGCTTCTTTATGGTCAGCCAGAAACAGAGGCGACTAACGGAGATCTTACTGAAGAAATTGTATCAACTGACGAAGAAGTTACTGCTGCAGAAGCatg 1235 0.43 MSRLLRNTSLLKRSLFDSEGFKRGILGTSQIFNFSSKGRRGSKSDGSDSNEENMSKKDLALQQALDQITSSFGKGSIMWLGRSVLPKQVPVVSSGSLALDIALGVGGFPKGRVAEIYGPEASGKTTLALHVIAEAQKQGGYCVFVDAEHALDQALAESIGVNTQNLLLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSMSQCILIFVNQVRSKLSTFGGFGGPTEVTCGGNALKFYASVRLNIKRIGFLKKGEEILGSQVLVKVVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFISKSGAYFRYNDQTFHGKDAFKRFLAENSNMLEELTIKLREKLLYGQPETEATNGDLTEEIVSTDEEVTAAEA 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01048 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 323 IPR027417 -
Bva05g01048 411 CDD recA 56 382 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 ProSiteProfiles RecA family profile 2. 257 328 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Bva05g01048 411 ProSiteProfiles RecA family profile 1. 88 247 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Bva05g01048 411 PRINTS RecA protein signature 218 247 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 PRINTS RecA protein signature 146 175 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 PRINTS RecA protein signature 266 294 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 PRINTS RecA protein signature 180 209 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 PRINTS RecA protein signature 299 328 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 PRINTS RecA protein signature 352 369 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 SMART AAA_5 110 284 IPR003593 -
Bva05g01048 411 Pfam recA bacterial DNA recombination protein 60 324 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 Hamap Protein RecA [recA]. 57 384 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 Gene3D - 87 389 IPR027417 -
Bva05g01048 411 PANTHER RECA 1 403 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 TIGRFAM tigrfam_recA: protein RecA 57 379 IPR013765 GO:0003697|GO:0005524|GO:0006281
Bva05g01048 411 PANTHER REPAIR PROTEIN RECA, PUTATIVE-RELATED 1 403 - -
Bva05g01048 411 SUPERFAMILY RecA protein, C-terminal domain 324 380 IPR023400 -
Bva05g01048 411 ProSitePatterns recA signature. 269 277 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01048 Bva-Chr5 5396983 5397351 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01048 K03553 - gmx:100781271 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01048 05 5396983 5397351 Bva06g00592 06 6093511 6099176 BWGD
Bva05g01048 05 5396983 5397351 Bva05g01048 05 5396983 5397351 ECH