Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g01002 ATGCGATCAGGAGCTTGTGCATTGCAGCAGACCCTCACAGCGGAGGCTGCTTCAATCTTGAAGCACTCTCTGGGGTTGGCCAGGAGGAGGGGCCATGCACAGGTCACTCCTCTGCATGTGGCAGCCACTTTGCTGAGCTTAAGAGCCAGTTCCCTTAGAAGGGCTTGTCTCAAATCTCAGCCACACCTAACTTCATATCCTCTTCAATGCAGAGCTCTTGAGCTTTGCTTCAATGTGGCTCTCAACAGGCTCCCAACAACACCAGCTCCTTTGCTCCACACCCAGCCACAACTTTCAAACGCTCTCATTGCTGCACTCAAAAGAGCACAGGCTCACCAGAGAAGAGGATGCATagagcaacaacaacaacaaccacTTCTGACCATAAAGGTAGAGCTTGAACAGCTCATCATTTCCATTCTCGATGACCCTAGCGTTAGCAGGGTTATGAGAGAGGCTGGGTTCTCTAGCACTGCTGTTAAGAACAATATAGAGGACTCTTCGGCCCCTTCTGTTTTCCAGTGTTACAACAGTTCTGGTGgtgttttctcttctccttgtTCACCTACTCCTTCTGAAAGCCAGAGAGAAGCCATCAACCCTAGCCATAATGTCTGGCAGACCCATTTCTTGGCTTACAGTTCTGAGTACAACCCACTTCTCTTTAATCCTCAAAAGAGAATACTAGTTCATCCCTTCACTGACTCAGCCTCTTCCAAGGAAGATATCGAGTTGGTTCTGGATACCCtagtgaagaaaaagagaaagaacacTGTGATAGTTGGTGATTCACTGTCCCTCACTGAAGGCCTTGTGGGAGAGCTGTTGGGAAGGTTAGAGAAAGGAGAGGTTCCCGATGAGTTGAAATCAGcccattttatcaaatttcaattggCACCAATTTCTTTTAGGGTCATGAAAAGACAAGAGGTTGAAATGAGCCTCTCTGAACTGAAAAGAAAGGTGGACTCTATTGTATCAAGGGGAGGGGGTGTCATTATCCATATTGGAGACTTAAAATGGATAGTGGAGACAAGTTTGAGTGGAAAAGAGGGAGTTTCTCCGGATAGAGAATTATTCTCTGCTTATAATCCAGTTGATCATCTAGTGTCAGAAATAGGCAAGATGTTCTCTGACTATGAGAGATCAGATGCTAAGGTATGGTTAATTGCCACTGCAAGTTATCAAACATACATGAGATGTCAAATGAGGCAACCCTCCCTTGAGACCCAGTGGGCTCTTCAGGCTGTTCCTGTTCCTTCAGGTGGACTTGGTTTGAGTCTCCATGCTTCCAGTGTCTTTAATTCAAAGATGGCCATCTCCCAGAACCCATCTCATATGCTGGAAACAAAGCCCTTTAGTGGCAAGGAGGAAGAGGATAAGCTTACTAGCTGTGAAGAATGTGCCtcaaattatgaaaaagaagCTCAGTTGTTCAAACCAGGCCAGAAGAAACTGTTGCCTTCCTGGCTTCAGTCTTATAGCACAGAAGCTCACCAAAAGGATGAATTGATCCAGTTGAGAAGAAAGTGGAATAGATTATGCCACTGTCTACACCAAAGCAAGAATTCTCAGAACAACTGCAGCAGCAATTTAAACGGTAATAAAAACTGTCCTTATAGTTCATCGTATCAATGGTGGACAAACCAAGGTGGTATCTTCCCAGATTCAAGTTCCATATCCTTCACCGCCGACTCTGCCATGAAACCCACTTACAGTTCCAATCTGGTATCTCGATTCCGGCGACAACAATCATGCAACATTGAGTTCAATTTCAGCAGGGAAACTGAAAAACAGCAGGCCCCAGAGCCAAGCTTAGATTTTCTTAAGCGCACGGAAGGGAAAGAAGTAAAGATTACCCTTGCTCTTGGGAATTCCTCATTCGGTGATTCAGGGCAAACGGTGGAAAATATAACTGATAGAACACTACGACAAGCTCATATTTGTAAACTGTTGCAGGAGAATGTGCCATGGCAATCTGAAACAGTTCCTTCAATAACAGAGGCCTTGGTTGATTCCAAATCAGCAAACCAAAACACTACTTGGTTTATTATGCAGGGCGATGACTCTATTGGAAAAACAAGGTTGGCACGCGCAATTGCAGAATCAGTTTTTGGCTCAGCTGATTTGTTCTTTCACTTGGAcatgagaaagaaggaaacttCAGCAGCCCCATGTTCTGAAATGCTGGCTAGAGCATTGAAAACCCATGAACGGCTTGTGGTGTTAGTAGAAAATGTTGATTTTGCAGATGCCCAGTTCAAGAAATTCCTCGCTGATGGTTTTGAAACAGGAAAGTTTGAAGATTTATATAGGAGAGAGGAAAATCCAGGACAAGCAATATTTATGTTGAGTAACAGTGGCCTGACAAGCAATGAAGAAGAGAATCAGGACTCTGCGATCAAAATGGTGTTACAGATCAGTAAAGCAAAGCCTAACTTGGAGGCACCTTATTCGGAGCACAAGCGCAGAGCTGAATTGGATTTGTTCACCAAGACCAAGAAGCCCagaattgaagaaaaggaagaggggTTGGTAGAATCTGAACAGGGgaacaaaaagagagagttTTCAAGGCAATCAAGCTTTAACACCCTTGACCTGAATATCATAGCTGACGAAGAAGATGATGGGGAACATAAAACCGGGGAAAGTAGCCCCATTTCTAGTGATTTAACAAGAGAAAGCATAGTTGATCCCTTGAACCCAAATGGATTTCTTGACTCAATTGAGAATCGCTTTGAATTCAATCGAACTCCAGCAAGGGACAGGGAAATGGCAGAGTTATTTCTGTCCAAAATCAAGGGGTCTTTTGAGGAGATTTGGGGAAAGCATAATTTGGTAAATTTTAGCGTGGAAGAGAGGGTGATAGAGGAAGTAAAATTTGGGTGTGGTTCTTTTACTAACAGCTTGTTTGAGAAATGGGTGAAAGATATTTTTCAAACCAGCTTAAAAACAGTTAACTTTGGGAAGGAGGGTATAGTTTTTAAACTTTGTTGGGGTGGTAAAGGAGATCATAGAATTTTGGATAGTGGGTTCATGAGTTCATCTCTGCCTAACAACATCCAAGTTAATTACTTGATTAATTA 3089 0.4137 MRSGACALQQTLTAEAASILKHSLGLARRRGHAQVTPLHVAATLLSLRASSLRRACLKSQPHLTSYPLQCRALELCFNVALNRLPTTPAPLLHTQPQLSNALIAALKRAQAHQRRGCIEQQQQQPLLTIKVELEQLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSAPSVFQCYNSSGGVFSSPCSPTPSESQREAINPSHNVWQTHFLAYSSEYNPLLFNPQKRILVHPFTDSASSKEDIELVLDTLVKKKRKNTVIVGDSLSLTEGLVGELLGRLEKGEVPDELKSAHFIKFQLAPISFRVMKRQEVEMSLSELKRKVDSIVSRGGGVIIHIGDLKWIVETSLSGKEGVSPDRELFSAYNPVDHLVSEIGKMFSDYERSDAKVWLIATASYQTYMRCQMRQPSLETQWALQAVPVPSGGLGLSLHASSVFNSKMAISQNPSHMLETKPFSGKEEEDKLTSCEECASNYEKEAQLFKPGQKKLLPSWLQSYSTEAHQKDELIQLRRKWNRLCHCLHQSKNSQNNCSSNLNGNKNCPYSSSYQWWTNQGGIFPDSSSISFTADSAMKPTYSSNLVSRFRRQQSCNIEFNFSRETEKQQAPEPSLDFLKRTEGKEVKITLALGNSSFGDSGQTVENITDRTLRQAHICKLLQENVPWQSETVPSITEALVDSKSANQNTTWFIMQGDDSIGKTRLARAIAESVFGSADLFFHLDMRKKETSAAPCSEMLARALKTHERLVVLVENVDFADAQFKKFLADGFETGKFEDLYRREENPGQAIFMLSNSGLTSNEEENQDSAIKMVLQISKAKPNLEAPYSEHKRRAELDLFTKTKKPRIEEKEEGLVESEQGNKKREFSRQSSFNTLDLNIIADEEDDGEHKTGESSPISSDLTRESIVDPLNPNGFLDSIENRFEFNRTPARDREMAELFLSKIKGSFEEIWGKHNLVNFSVEERVIEEVKFGCGSFTNSLFEKWVKDIFQTSLKTVNFGKEGIVFKLCWGGKGDHRILDSGFMSSSLPNNIQVNYLIN 1029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g01002 1029 PANTHER PROTEIN SMAX1-LIKE 5 1 1002 - -
Bva05g01002 1029 Gene3D - 631 850 IPR027417 -
Bva05g01002 1029 ProSiteProfiles Clp repeat (R) domain profile. 8 171 IPR004176 -
Bva05g01002 1029 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1002 - -
Bva05g01002 1029 SUPERFAMILY Double Clp-N motif 12 165 IPR036628 -
Bva05g01002 1029 MobiDBLite consensus disorder prediction 839 895 - -
Bva05g01002 1029 MobiDBLite consensus disorder prediction 839 856 - -
Bva05g01002 1029 Pfam Clp amino terminal domain, pathogenicity island component 131 167 IPR004176 -
Bva05g01002 1029 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Bva05g01002 1029 Gene3D - 229 421 IPR027417 -
Bva05g01002 1029 Gene3D - 9 168 IPR036628 -
Bva05g01002 1029 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 787 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g01002 Bva-Chr5 5127273 5131080 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g01002 - - jre:108979658 1305.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g01002 05 5127273 5131080 Bva06g00645 06 6367054 6370862 BWGD
Bva05g01002 05 5127273 5131080 Bva05g01002 05 5127273 5131080 ECH