Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00987 ATGCCGCCAGCTCTGATGAATCCGCTATTGCCAGAACCATCGTCGGTGCCTTCTCCCAGCCCTGAATCTGTTTCTCAAGGACCCGCTCTGGAGAATCGACGTTTCGGAGGTCTAAGAGGTTTGCTTTGGCGAATAAATCTTGGGGTTTTgccatcttcatcttcagctTCCATTGATGATCTTCGTAGGGCCGCAGCTGACTCTCGAAGGAGGTATGCTAGTTTGAGAAGACGTCTCTTAGTTGATCCACATATTCCAAAGGACGGAAGTAATTCACCCTATCTTACAATGGACAATCCACTCTCACAAAATCcagATAGTACATGGAGTCGTTTTTTCCGTAATGCGGAGCTGGAGAGAATGGTTGATCAGGATTTGTCTCGTCTATACCCAGAACATGGAAACTATTTCCAGACAGCTGGATGCCAAGGCATGTTGAGACGAATTTTACTGCTCTGGTGTCTTAGGCATCCAGAGTGTGGTTATAGACAAGGGATGCATGAATTACTGGCTCCACTGCTGTATGTTCTCCAAGTTGATTTGGAGCGTCTTTCAGAAGTTCGTAAGCTTTATGAAGATCACTTCACAGACAGATTTGATGGCATTTTATGCCAAGAGAATGATCTTTCTTACAACTTTGACTTTAGCAAATCTCCAGATTTGATGGAGGATGAAATTGACTCCCATGGAAATGCAATGAAAACGAAGCGTCTTGATGAGCTTGATCCTGAGATTCAGACTATTGTACTGCTAAGTGATGCTTATGGGGCTGAAGGTGAACTGGGTATTGTTTTATCGGAGAAATTTTTGGAACATGATGCTTACTGTATGTTTGATGCTTTAATGAATGGGTCCCGTGGTTCAGTTGCAATGGCAGATTTCTTCTTATCCTCCCCTGCAGTTGGGTCTCATACTGGCTTACCACCCGTAATTGAAGCTTCTACTGCCATGTATCAGTTACTTTCCCTTGTGGATTCATCCCTGCACAGCCATCTTGTTGATCTTGGGGTTGAACCCCAGTATTTTGCTCTCCGCTGGTTGCGAGTTTTATTTGGACGAGAGTTTTCACTTGGCCACCTCTTGATCATCTGGGATGAGATATTTGCATCGGATAATAGAAAAGTGGCAAAAAAAGTTGATGATGAGACAGACTCTGGCTTTAGGATTTTACATTCACCTCGAGGGACATTTATCATTGCTATGGCTGTAGCAATATTACTTCAGTTAAGATCTTCACTACTTGCGACTGAAAATCCTACAATCTGTCTCCAGAGATTATTAAACTTCCCTGAGAACGCTAATATTAATAAGCTACTGGAGAAGGCTAAATCCTTGTGGGCTCTTGCATTAAGTACTGACATTTCATCCTCATCACCTATATTTATTGGGGTTTATAACCCAAGTAAATCAGTGATGACAAAATCTGTGACCCTTCCATCTGAATCAGTTTCTCCCAAAACTCCTCTGAATCTGGTAACTGATAGCTATTGGGAAGAAAAGTGGAGAGTTCTTCATAATGCTGAAGAACTTAAGAAGAAAGATGGTGCAGAAAAACACATTCCTACTCGAAAAAAGGGATGGATGGAAAAGGTAAAATTCACTCTGAAAAGGGCAGAATCTGATCCATCTCCACCAAAGGTTCATAATGGCAAGAAGGAATGTAAGGCATCTGTTAGACGCAGTTTGCTAGAAGATCTTTCTGGGAAACTTGGCTCAGAAGAAGATATAGGTACAATGCACTGTCATGAAATCTTAAACCAGCAGGATAATGTTTCTGTAGAAGGTAAAGTGGAGGGACAAGATGGTGGTGATTGTAAAGACGACCATTATACTGCTGAAGATACAAGCCTGAGTGGAAATACTGGCAGTGAAGAAAACTTGTCTATTTTTTCTGACTCAAATAGTCCTCCTAACGAGGCCATTGATCATGAAAATGCCTCGGAGAAAAGTAGCGTTGCATCAAATTTATCCGTTGATGAATGCAATGAAAATGCACTTGCCGCTGCCAATGATTCACCTCCTCCAATTTCTGATCCTCCTGGGAACACAACTCCTACATCAGTATGCAATAATGACCCCACAGAAAATTCAGCTGTAGGTTCCAAGGAGAGAAAGGTTCTTCCGAGTAAGTTCCCGTGGTTTTGGAAGTTTGGTAAGAATGCTAGTGAGGGTATAGCTGAGAAAAGAGTAGGTGCTTCTGAGGCTACAAAATCCACCGACAGTTCTAGTAATCAAAGTACTACAACAGCTTCTTCTACTGCTGATGGGCGTTGTAGTTCTGTTAGTTGCAAAGGGGATTCTGTGGACCAGAATGTGATGGGCACTTTGAGGAATATTGGGCAGTCTATGCTTGAGCACATTCAGGTAATTGAGTCTGTTTTCCAGCAAGAACGGGGACAAGGGACCTCGTTAGAAAACTTCTCTAAGAATGTTCTGGTAGGCAAAGGGCAGGTTACTGCCATGACAGCTCTTAAAGAGCTTCGGAAAATCAGCAATCTTCTATCTGAGATGTG 2513 0.4214 MPPALMNPLLPEPSSVPSPSPESVSQGPALENRRFGGLRGLLWRINLGVLPSSSSASIDDLRRAAADSRRRYASLRRRLLVDPHIPKDGSNSPYLTMDNPLSQNPDSTWSRFFRNAELERMVDQDLSRLYPEHGNYFQTAGCQGMLRRILLLWCLRHPECGYRQGMHELLAPLLYVLQVDLERLSEVRKLYEDHFTDRFDGILCQENDLSYNFDFSKSPDLMEDEIDSHGNAMKTKRLDELDPEIQTIVLLSDAYGAEGELGIVLSEKFLEHDAYCMFDALMNGSRGSVAMADFFLSSPAVGSHTGLPPVIEASTAMYQLLSLVDSSLHSHLVDLGVEPQYFALRWLRVLFGREFSLGHLLIIWDEIFASDNRKVAKKVDDETDSGFRILHSPRGTFIIAMAVAILLQLRSSLLATENPTICLQRLLNFPENANINKLLEKAKSLWALALSTDISSSSPIFIGVYNPSKSVMTKSVTLPSESVSPKTPLNLVTDSYWEEKWRVLHNAEELKKKDGAEKHIPTRKKGWMEKVKFTLKRAESDPSPPKVHNGKKECKASVRRSLLEDLSGKLGSEEDIGTMHCHEILNQQDNVSVEGKVEGQDGGDCKDDHYTAEDTSLSGNTGSEENLSIFSDSNSPPNEAIDHENASEKSSVASNLSVDECNENALAAANDSPPPISDPPGNTTPTSVCNNDPTENSAVGSKERKVLPSKFPWFWKFGKNASEGIAEKRVGASEATKSTDSSSNQSTTTASSTADGRCSSVSCKGDSVDQNVMGTLRNIGQSMLEHIQVIESVFQQERGQGTSLENFSKNVLVGKGQVTAMTALKELRKISNLLSEM 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00987 837 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 102 287 - -
Bva05g00987 837 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 38 331 IPR035969 -
Bva05g00987 837 SMART tbc_4 30 417 IPR000195 -
Bva05g00987 837 MobiDBLite consensus disorder prediction 1 30 - -
Bva05g00987 837 MobiDBLite consensus disorder prediction 595 655 - -
Bva05g00987 837 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 307 446 IPR035969 -
Bva05g00987 837 MobiDBLite consensus disorder prediction 735 761 - -
Bva05g00987 837 MobiDBLite consensus disorder prediction 682 697 - -
Bva05g00987 837 MobiDBLite consensus disorder prediction 1 18 - -
Bva05g00987 837 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 2 765 - -
Bva05g00987 837 Pfam Rab-GTPase-TBC domain 271 372 IPR000195 -
Bva05g00987 837 Pfam Rab-GTPase-TBC domain 119 178 IPR000195 -
Bva05g00987 837 Gene3D - 310 453 - -
Bva05g00987 837 MobiDBLite consensus disorder prediction 614 655 - -
Bva05g00987 837 ProSiteProfiles TBC/rab GAP domain profile. 33 371 IPR000195 -
Bva05g00987 837 Coils Coil 58 78 - -
Bva05g00987 837 MobiDBLite consensus disorder prediction 667 703 - -
Bva05g00987 837 MobiDBLite consensus disorder prediction 536 555 - -
Bva05g00987 837 PANTHER YPT/RAB-GAP DOMAIN OF GYP1P SUPERFAMILY PROTEIN 2 765 - -
Bva05g00987 837 MobiDBLite consensus disorder prediction 730 761 - -
Bva05g00987 837 MobiDBLite consensus disorder prediction 599 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00987 Bva-Chr5 5049714 5054479 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00987 K18469 - gmx:100816501 1042.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00987 05 5049714 5054479 Bva06g00662 06 6466743 6471703 BWGD
Bva05g00987 05 5049714 5054479 Bva05g00987 05 5049714 5054479 ECH