Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00388 atgttctttGTTCCAATGGCTTCCACTGGTTCAAGGTTCATCAAGTGTGTGATGGTTGGAGACGGAGCTGTAGGCAAGACATGCATGCTTATTTGCTATACCAGCAATAAATTCCCGAAGGATTATATTCCTACGGTGTTCGATAACTTTAGCGCAAATGTGGTCGTCGAAGGCACAACAGTCAATTTAGGCCTCTGGGACACCGCTGGGCAAGAGGATTACAATAGACTGAGACCTTTGAGCTACAGAGGGGCAGATGTCTTTGTCTTGGCTTTCTCTTTGGTTAGTCGTGCAAGCTATGAAAACGTACTCAAGAAGTGGATCCCAGAACTCCAGCACTATGCCCCTGGCATCCCTGTGGTACTCGTTGGCACCAAACTAGATCTCCGAGAAGACAAACATTATTTGGCCGATCATCCTGGCCTGGTGCCTGTGACTGCTGAGCAGGGCGAGGAACTCCGTAAACAGATTGGAGCTAAGTATTACATTGAGTGCAGCTCGAAAACTCAGCAGAATGTGAAGTCAGTTTTTGATGCTGCCATCAAGGTGGTCATCAAGCCGCCACAAAAACAGCatgagaagaagagaaaaatactcCGAGGGTGTCTAATAAACGTCCTTTGTGGAAGGAATATTGTTCGTCTTCAATG 650 0.4508 MFFVPMASTGSRFIKCVMVGDGAVGKTCMLICYTSNKFPKDYIPTVFDNFSANVVVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYAPGIPVVLVGTKLDLREDKHYLADHPGLVPVTAEQGEELRKQIGAKYYIECSSKTQQNVKSVFDAAIKVVIKPPQKQHEKKRKILRGCLINVLCGRNIVRLQ 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00388 216 ProSiteProfiles small GTPase Rho family profile. 7 184 - -
Bva05g00388 216 TIGRFAM small_GTP: small GTP-binding protein domain 14 178 IPR005225 GO:0005525
Bva05g00388 216 SMART rho_sub_3 16 187 IPR001806 GO:0003924|GO:0005525
Bva05g00388 216 Pfam Ras family 15 184 IPR001806 GO:0003924|GO:0005525
Bva05g00388 216 PANTHER GTPASE, PUTATIVE-RELATED 6 209 - -
Bva05g00388 216 SMART ran_sub_2 19 215 - -
Bva05g00388 216 SMART ras_sub_4 11 187 - -
Bva05g00388 216 PRINTS Transforming protein P21 ras signature 54 76 - -
Bva05g00388 216 PRINTS Transforming protein P21 ras signature 37 53 - -
Bva05g00388 216 PRINTS Transforming protein P21 ras signature 116 129 - -
Bva05g00388 216 PRINTS Transforming protein P21 ras signature 162 184 - -
Bva05g00388 216 PRINTS Transforming protein P21 ras signature 14 35 - -
Bva05g00388 216 Gene3D - 7 204 IPR027417 -
Bva05g00388 216 SMART rab_sub_5 14 187 - -
Bva05g00388 216 ProSiteProfiles small GTPase Ras family profile. 9 207 IPR001806 GO:0003924|GO:0005525
Bva05g00388 216 CDD Rop_like 13 185 - -
Bva05g00388 216 ProSiteProfiles small GTPase Rab1 family profile. 9 216 - -
Bva05g00388 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 184 IPR027417 -
Bva05g00388 216 PANTHER RHO FAMILY GTPASE 6 209 IPR003578 GO:0005525|GO:0007264
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00388 Bva-Chr5 1916280 1918760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00388 14 207 EF-hand Containing Proteins AT5G27540 23.196 1.03e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00388 K04392 - cpap:110810123 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00388 05 1916280 1918760 Bva06g01321 06 9946907 9949812 BWGD
Bva05g00388 05 1916280 1918760 Bva05g00388 05 1916280 1918760 ECH