Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00382 ATGGACAGCATCGCCAGTTTTGTGGTTCCTAATTCTTCGTGTTTGATCTATACTGACGAAAATGGTGTCACTGCTCTACCAAGCAAAGCTTCACAAGTGAATAATGAAGAGCCTACTAATTATACCCACCCCAAAGTTCCTGGATGGTTTTCTGAGTATTCTCCAATATGGCCAGGGCAAGCACACTTTTTGAAAGTAGAGAAGATCCTGTTCCAAGGGAAATCTGAATACCAAAGTATGATGGTATTTCAGTCGTCAACGTACGGCAAGGTTTTCGTTCTGGATGGAGCACTCCAACTCACTGAGAAGGACGAATGTTCTTATCAAGAAATGATGACCCACCTTCCCCTTTGCTCTATTCCAAACCCCGAAAAGGTGCTGCTAATTGGCGGTGGAGATGGTGGCATTCTCAGGGAAATATCCCGCCACTCATCTGTGGAAGAAATTGACATATGTGAAATAGATACAATGCTGATTGATGTGTATAAACAATTTTTCCCGGATATAGCCATTGGATATAAGGACTCTCGAACTTTGTTTCTGAATTCTGTCCCCAGTGGCATCTACGATGCAATAATAGTGGACGCCTTTGATCCAATAAGGCCTGATCACGAGCTTTTTGAATCTGAATTCTTTGAACTGGTTTCAAAAGCTCTCCGCCCAGGTGGAGTTCTGTGCATCCAAGCAGAGAGCATATGGTTCAAGTCCCTTGACATTGAACAGCTTCTCACAAAATGTCGGCAAATATTCAAAGGCTGTGTTGATTATGCATGGACTACTGTTCCTGCATATCCAAGGCAAGCAAAGCATACTTCAAATCTCCATCACATTCATCCTTGCCTAGTAGTGCTTGGGGTCATTGGTTTCTTGCTTTGTTCAACTGATGGCCCATGCGTGGACTTCAGAGATCCAATCAACCCCATAGATCCAGAAAGTTATGGCATATCAAAGCAACCCTTGAAGTTTTACACCTCAGAGGTTCACTCAGCTGCATTTTGCTTGCCATCTTTTGCCAAAAAGTTCACTGCTACAGAAGCTAAGAGCAGCGGTGACGAATTTTG 1061 0.4336 MDSIASFVVPNSSCLIYTDENGVTALPSKASQVNNEEPTNYTHPKVPGWFSEYSPIWPGQAHFLKVEKILFQGKSEYQSMMVFQSSTYGKVFVLDGALQLTEKDECSYQEMMTHLPLCSIPNPEKVLLIGGGDGGILREISRHSSVEEIDICEIDTMLIDVYKQFFPDIAIGYKDSRTLFLNSVPSGIYDAIIVDAFDPIRPDHELFESEFFELVSKALRPGGVLCIQAESIWFKSLDIEQLLTKCRQIFKGCVDYAWTTVPAYPRQAKHTSNLHHIHPCLVVLGVIGFLLCSTDGPCVDFRDPINPIDPESYGISKQPLKFYTSEVHSAAFCLPSFAKKFTATEAKSSGDEF 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00382 353 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 47 294 IPR030374 -
Bva05g00382 353 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 47 340 IPR029063 -
Bva05g00382 353 Gene3D Vaccinia Virus protein VP39 102 347 IPR029063 -
Bva05g00382 353 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 126 139 IPR030373 -
Bva05g00382 353 Pfam Spermidine synthase tetramerisation domain 48 102 IPR035246 -
Bva05g00382 353 Hamap Polyamine aminopropyltransferase [speE]. 48 343 IPR001045 GO:0003824
Bva05g00382 353 PANTHER SPERMIDINE SYNTHASE 45 343 - -
Bva05g00382 353 PANTHER SPERMIDINE/SPERMINE SYNTHASE 45 343 IPR001045 GO:0003824
Bva05g00382 353 Gene3D Spermidine synthase, tetramerisation domain 30 101 IPR037163 -
Bva05g00382 353 Pfam Spermine/spermidine synthase domain 105 269 - -
Bva05g00382 353 CDD AdoMet_MTases 147 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00382 Bva-Chr5 1892686 1895447 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00382 K00797 - gmx:100785862 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva06g01334 06 9992286 9995282 Bva05g00382 05 1892686 1895447 ECH
Bva05g00382 05 1892686 1895447 Bva05g00382 05 1892686 1895447 ECH