Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00336 ATGGGGGAGAGCACAGTGGGCGGTGCTTCGCTGCCGGCGGGTCCAGACGCCCAGAAGCGGAGGGTCACCTACTTCTACGAACCCACGATCGGCGATTACTACTATGGCCAAGGTCACCCGATGAAACCCCACCGTATCCGCATGGCTCACAATCTCATCATTCATTACTCGCTTCATCGACGGATGGAAATTAACCGTCCCTTCCCGGCGGGACCCGACGATATCCGCCGTTTCCACTCCGACGACTACGTCGACTTCCTCCGTAGCGTCTCGCCGGAGACTCTCGGTGAGAACTCCTTCTCTCGTCAGCTCAAGCGCTTCAATGTTGGCGAGGACTGTCCCGTCTTTGACGGCTTATTCACTTTTTGTCAGGCCTCCGCTGGCGGCTCCATTGGTGCCGCGGTCAAGTTAAACCGTGCTGACGCTGACATTGCTATCAATTGGGCCGGTGGCTTGCACCATGCTAAGAAGGCTGAGGCTTCGGGCTTTTGTTATGTGAATGACATCGTTCTTGGCATTCTTGAGCTTCTCAAGTATCACAAGCGTGTATTGTATGTTGATATTGATGTTCACCATGGAGATGGTGTTGAGGAGGCATTTTACACCACTGACAGAGTGATGACAGTGTCTTTCCATAAGTTTGGGGACTTTTTCCCAGGCACTGGTCACATTAGAGACATTGGTGCGGGCCCTGGGAAGAACTATGCTCTAAATGTCCCACTTAATGATGGAATGGATGATGATAGTTTCCGCGATCTATTTCGGCCTCTCATTCAAAAAGTCATGGAGGTTTATCAACCAGATGCAGTTATTCTTCAATGTGGAGCGGATTCATTATCTGGTGACAGATTGGGGTGCTTCAACTTGTCTGTGAAGGGTCATGCTGATTGCCTTCGTTTCCTTAGATCTTTCAATGTTCCTCTAATGGTCTTGGGTGGGGGTGGATATACAATTCGGAACGTTGCACGCTGCTGGTGTTATGAGacGGCAGTGGCAGTGGGAGTGGAACCTGAAAATAAGTTGCCTTACAATGattattatgaatattttggtcCAGATTATACTCTTCACGTTGACCCGGGCAACGTCGAGAACCTGAACTCACCCAAggatattgaaaaaataagGAACACACTACTAGAACAGCTTACTAGACTTCCACATGCGCCCAGTGTACCTTTTCAAATGACGCCATCTACCATAGAAGAACCAGAAGAGGAAGAAGAGGACATGGATCGAAGACCAAAGCGTCGCATATGGAATGGTGAAGATTATGATTCTGACCATGAGCAGGCTAGTTCGAAGTGCTCAAATTTAACTGGCAATCTGAGCAGGGATGTTGCTGATGAGATGGAAGAAGATAAGGCAGAAGAGCCTCCTTCATCTTG 1388 0.482 MGESTVGGASLPAGPDAQKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIIHYSLHRRMEINRPFPAGPDDIRRFHSDDYVDFLRSVSPETLGENSFSRQLKRFNVGEDCPVFDGLFTFCQASAGGSIGAAVKLNRADADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKYHKRVLYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIRDIGAGPGKNYALNVPLNDGMDDDSFRDLFRPLIQKVMEVYQPDAVILQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNDYYEYFGPDYTLHVDPGNVENLNSPKDIEKIRNTLLEQLTRLPHAPSVPFQMTPSTIEEPEEEEEDMDRRPKRRIWNGEDYDSDHEQASSKCSNLTGNLSRDVADEMEEDKAEEPPSS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00336 462 MobiDBLite consensus disorder prediction 410 431 - -
Bva05g00336 462 PIRSF HDAC_I_euk 8 461 IPR003084 GO:0004407|GO:0016575
Bva05g00336 462 Pfam Histone deacetylase domain 39 330 IPR023801 -
Bva05g00336 462 PRINTS Histone deacetylase superfamily signature 267 277 IPR000286 -
Bva05g00336 462 PRINTS Histone deacetylase superfamily signature 150 173 IPR000286 -
Bva05g00336 462 PRINTS Histone deacetylase superfamily signature 182 197 IPR000286 -
Bva05g00336 462 PRINTS Histone deacetylase signature 107 124 IPR003084 GO:0004407|GO:0016575
Bva05g00336 462 PRINTS Histone deacetylase signature 41 58 IPR003084 GO:0004407|GO:0016575
Bva05g00336 462 PRINTS Histone deacetylase signature 169 185 IPR003084 GO:0004407|GO:0016575
Bva05g00336 462 PRINTS Histone deacetylase signature 128 148 IPR003084 GO:0004407|GO:0016575
Bva05g00336 462 PRINTS Histone deacetylase signature 228 241 IPR003084 GO:0004407|GO:0016575
Bva05g00336 462 PRINTS Histone deacetylase signature 245 263 IPR003084 GO:0004407|GO:0016575
Bva05g00336 462 PRINTS Histone deacetylase signature 74 92 IPR003084 GO:0004407|GO:0016575
Bva05g00336 462 PANTHER HISTONE DEACETYLASE 7 435 - -
Bva05g00336 462 CDD HDAC_classI 25 332 - -
Bva05g00336 462 MobiDBLite consensus disorder prediction 390 462 - -
Bva05g00336 462 SUPERFAMILY Arginase/deacetylase 20 384 IPR023696 -
Bva05g00336 462 PANTHER HISTONE DEACETYLASE 6 7 435 - -
Bva05g00336 462 Gene3D Histone deacetylase domain 12 398 IPR037138 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00336 Bva-Chr5 1646011 1649298 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00336 K06067 - csv:101204443 830.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00336 05 1646011 1649298 Bva06g01406 06 10384965 10388264 BWGD
Bva05g00336 05 1646011 1649298 Bva05g00336 05 1646011 1649298 ECH