Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00280 ATGGAAGCCCTGGCAGTTTTTGGCGGAAGCAATGCTTGTACCTCATCCTCTCTTGTGCGCTCACCAGCCAAGAGGACTTGCAGCTCATCCTATGCACAGAAGCATATCTTATGCACCGGCAATCACCAAGAGCTTTCAGCGTTTCCTTCAAAATCTCATCTTTTCTCATATTTCCCTTCTCGTCCTTATGGTAAAACCCTCAGCAGCAGAAGCAGCAAACAGTCCGGCATCTTCCTTCCCCACTTAATTGCTTCATTGGGAGAAATTGAACAAACTTACATAATGGTGAAGCCAGATGGTGTGCAACGTGGCCTCGTTGGAGAAATTATTTCGAGATTTGAGAAGAAGGGATTCAAGTTAACTGGCTTGAAACTCTTTCAATGTCCAAAAGATTTAGCTGAGGAGCATTACAAGGACCTTAAGGCAAAGCCATTCTTCCCTAAGCTGATTGACTATATTACCTCAGGTCCTGTTGTATGTATGGCTTGGGAAGGGGTTGGAGTTGTAGCATCAGCACGTAAGCTTATTGGGTCTACAGATCCGCTTCAAGCTGAACCAGGGACAATAAGAGGGGATCTTGCTGTACAAACAGGAAGAAATGTTGTTCATGGCAGTGACAGTCCTGAGAATGGCAAGCGTGAAATAGCTCTATGGTTCAACGAAAACGAAATAAACCAATGGACTCCTGCCCAAGCACCATGGCTAAGAGAATG 713 0.4516 MEALAVFGGSNACTSSSLVRSPAKRTCSSSYAQKHILCTGNHQELSAFPSKSHLFSYFPSRPYGKTLSSRSSKQSGIFLPHLIASLGEIEQTYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLKAKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIALWFNENEINQWTPAQAPWLRE 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00280 237 SUPERFAMILY Nucleoside diphosphate kinase, NDK 89 235 IPR036850 -
Bva05g00280 237 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 1 237 - -
Bva05g00280 237 CDD NDPk_I 90 219 - -
Bva05g00280 237 Gene3D - 87 237 IPR036850 -
Bva05g00280 237 SMART ndk_5 89 226 IPR034907 -
Bva05g00280 237 Hamap Nucleoside diphosphate kinase [ndk]. 89 224 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Bva05g00280 237 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 1 237 - -
Bva05g00280 237 PRINTS Nucleoside diphosphate kinase signature 200 219 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Bva05g00280 237 PRINTS Nucleoside diphosphate kinase signature 92 114 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Bva05g00280 237 PRINTS Nucleoside diphosphate kinase signature 136 155 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Bva05g00280 237 PRINTS Nucleoside diphosphate kinase signature 156 173 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Bva05g00280 237 PRINTS Nucleoside diphosphate kinase signature 177 193 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Bva05g00280 237 Pfam Nucleoside diphosphate kinase 90 224 IPR034907 -
Bva05g00280 237 ProSitePatterns Nucleoside diphosphate kinases active site. 200 208 IPR023005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00280 Bva-Chr5 1368533 1371058 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00280 K00940 - jre:108986589 367.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00280 05 1368533 1371058 Bva08g01275 08 6669057 6673064 BWGD
Bva05g00280 05 1368533 1371058 Bva05g00280 05 1368533 1371058 ECH