Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00342 ATGGCTGCCAAGATCAAGATTGGGATCAATGGATTTGGAAGGATTGGCCGACTGGTGGCCAGGGTGGCTTTGCAGAGAGATGATGTTGAGCTCGTCGCTGTTAACGATCCTTTCATCACCACTGATTACATGACTTACATGTTCAAGTACGATAGTGTTCATGGCCAATGGAAGCACAATGACGTGAAGGTTAAGGACTCCAAGACCCTTCTCTTTGGTGACAAGCCGGTCACTGTTTTTGGAGTAAAgaATCCAGAGGAGATTCCATGGGGTGAGGCCGGGGCAGAATATGTTGTCGAGTCCACTGGAGTTTTCACTGACAAGGACAAAGCAGCTGCCCATTTGAAGGGTGGTGCAAAGAAGGTGATTATTTCAGCCCCCAGTAACAATGCCCCAATGTTCGTTGTCGGTGTCAATGAGAAAGAATACAAGGCAGATCTCAATATCGTTTCCAATGCTAGTTGCACTACCAACTGTCTTGCTCCACTAGCAAAGGTTATTCATGACAAATTTGGCATTATTGAAGGTCTCATGACCACTGTCCACTCCATCACTGCTACCCAGAAGACTGTTGATGGACCATCAATGAAGGACTGGAGAGGTGGTAGAGCTGCTTCCTTCAATATCATTCCTAGCAGTACAGGAGCTGCTAAGGCTGTTGGTAAGGTACTGCCATCGCTGAATGGAAAGTTGACTGGAATGGCTTTCCGTGTTCCCACTGTTGATGTTTCAGTGGTTGACCTTACTGTTAGACTTGAGAAGGCAGCCACCTATGATCAGATTAAAGCTGCAATCAAGGAGGCATCTGAGGGCCCCTTGAAAGGAATCCTTGGTTACACTGAGGATGATGTTGTCTCCACTGATTTTGTGGGTGATTGCAGGTCAAGCATCTTTGATGCAAAAGCTGGGATTTCATTGAGTGACAATTTTGTGAAGCTTGTCTCTTGGTATGACAATGAATGGGGTTACAGCTCGCGTGTGGTTGACTTGATCCGACACATGGCCTCTGTTCAGTG 1016 0.4656 MAAKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHNDVKVKDSKTLLFGDKPVTVFGVKNPEEIPWGEAGAEYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSNNAPMFVVGVNEKEYKADLNIVSNASCTTNCLAPLAKVIHDKFGIIEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMAFRVPTVDVSVVDLTVRLEKAATYDQIKAAIKEASEGPLKGILGYTEDDVVSTDFVGDCRSSIFDAKAGISLSDNFVKLVSWYDNEWGYSSRVVDLIRHMASVQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00342 338 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 153 160 IPR020830 GO:0016620
Bva03g00342 338 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 3 336 IPR020831 GO:0016620
Bva03g00342 338 PANTHER GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE 3 336 - -
Bva03g00342 338 PIRSF GAPDH 3 338 IPR020831 GO:0016620
Bva03g00342 338 Gene3D - 5 333 - -
Bva03g00342 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 149 167 IPR020831 GO:0016620
Bva03g00342 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 233 250 IPR020831 GO:0016620
Bva03g00342 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 176 192 IPR020831 GO:0016620
Bva03g00342 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 114 127 IPR020831 GO:0016620
Bva03g00342 338 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 273 288 IPR020831 GO:0016620
Bva03g00342 338 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 5 108 IPR020828 GO:0051287
Bva03g00342 338 Gene3D Dihydrodipicolinate Reductase; domain 2 154 319 - -
Bva03g00342 338 TIGRFAM GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 6 329 IPR006424 GO:0006006|GO:0016620|GO:0050661|GO:0051287
Bva03g00342 338 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 160 317 IPR020829 GO:0016620
Bva03g00342 338 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 154 317 - -
Bva03g00342 338 SMART gp_dh_n_7 5 155 IPR020828 GO:0051287
Bva03g00342 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 171 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00342 Bva-Chr3 2014161 2017345 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00342 K00134 - psom:113281052 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00342 03 2014161 2017345 Bva06g01472 06 10709225 10712433 ECH
Bva03g00342 03 2014161 2017345 Bva05g00277 05 1355049 1359092 ECH
Bva03g00342 03 2014161 2017345 Bva03g00342 03 2014161 2017345 ECH