LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva05g00231	ATGGGAGAGgaagaaaagaaaaccgaagaacagaaaatggaagagaaaaaagcaGAGGAGCCCAAGGCGGCAGcagaggagaagaaagaagaagtgaAACAACCAGAAAAGGCGGCGGAAGAGAAACAGGACCATAAAAAACCGGAGGAATCTAAAGATGGGAAAGAAGCCAAAGACCAACCACCTCCAGAAATTGTGCTTAAAGTTTACATGCATTGCGAAGGTTGTGCCCGTAAGGTTCGTCGCTCCCTTAAAGGATTCCAAGGTGTTGAAGATGTCATCACAGATTGCAAGACATCCAAGGTAGTTGTTAAGGGAGAAAAAGCTGATCCGTTGAAGGTTTTGGAGAGAGTGCAGAGGAAGAGCCATAGACAGGTTCAACTTCTCTCGCCGATCCCAAAACCACCGCCGCCGGAGGAGAAAAAACCcgaagaggaagagaagcccaaaccagaagagaaaaaagaagagCCTCAGATCATTACAGTTGTTCTGAAAGTTCACATGCATTGCGAAGCTTGCGCACAGGAAATCAAGAGACGCATACAGAGGATGAAAGGGGTTGAATCTGCAGAACCGGATCTAAATAACTCACAAGTGAGCGTAAAAGGAGTTTTTGATCCATCCAAGCTGGTTGAATACCTGTACAAGCGGACTGGGAAGCATGCAGTGGTCGCGAAGCAAGAACCAGCcgagaagaaggaagagaaaaaagaggaagCGAAAGCAGGGGACGAGGAGGAGAAGAAAGCCGAAGCAGGTGATGGCGAGAAAGAGAACAAGGGTGGTGGCGAAAGGGAGGagaacaaggaaaagaaagaggctGATGCCGCCAAAGCACCGGAGGCAGCCGGAGCACCCGTTGAAGAGACAAAGGTAGTAGAACTCAGAAGGAACGAGTACTACTATAACTATTACCCACAAAGGTATGTTATGGATCAGATGTATGCCTACCCACCTCAGATCTTCAGCGACGAGAATCCAAATGCCTGTTCTGTCATgta	1004	0.4084	MGEEEKKTEEQKMEEKKAEEPKAAAEEKKEEVKQPEKAAEEKQDHKKPEESKDGKEAKDQPPPEIVLKVYMHCEGCARKVRRSLKGFQGVEDVITDCKTSKVVVKGEKADPLKVLERVQRKSHRQVQLLSPIPKPPPPEEKKPEEEEKPKPEEKKEEPQIITVVLKVHMHCEACAQEIKRRIQRMKGVESAEPDLNNSQVSVKGVFDPSKLVEYLYKRTGKHAVVAKQEPAEKKEEKKEEAKAGDEEEKKAEAGDGEKENKGGGEREENKEKKEADAAKAPEAAGAPVEETKVVELRRNEYYYNYYPQRYVMDQMYAYPPQIFSDENPNACSVM	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva05g00231	334	CDD	HMA	164	223	IPR006121	GO:0046872
	Bva05g00231	334	MobiDBLite	consensus disorder prediction	1	62	-	-
	Bva05g00231	334	ProSiteProfiles	Heavy-metal-associated domain profile.	169	215	IPR006121	GO:0046872
	Bva05g00231	334	ProSiteProfiles	Heavy-metal-associated domain profile.	71	127	IPR006121	GO:0046872
	Bva05g00231	334	MobiDBLite	consensus disorder prediction	226	279	-	-
	Bva05g00231	334	MobiDBLite	consensus disorder prediction	1	65	-	-
	Bva05g00231	334	MobiDBLite	consensus disorder prediction	137	159	-	-
	Bva05g00231	334	MobiDBLite	consensus disorder prediction	226	291	-	-
	Bva05g00231	334	Pfam	Heavy-metal-associated domain	165	220	IPR006121	GO:0046872
	Bva05g00231	334	Pfam	Heavy-metal-associated domain	68	120	IPR006121	GO:0046872
	Bva05g00231	334	MobiDBLite	consensus disorder prediction	114	159	-	-
	Bva05g00231	334	CDD	HMA	71	126	IPR006121	GO:0046872
	Bva05g00231	334	Gene3D	-	62	134	-	-
	Bva05g00231	334	Gene3D	-	158	226	-	-
	Bva05g00231	334	SUPERFAMILY	HMA, heavy metal-associated domain	66	121	IPR036163	GO:0046872
	Bva05g00231	334	SUPERFAMILY	HMA, heavy metal-associated domain	158	229	IPR036163	GO:0046872
	Bva05g00231	334	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7	1	334	IPR044577	GO:0046872
	Bva05g00231	334	PANTHER	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 3-LIKE	1	334	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva05g00231	Bva-Chr5	1128774	1130821	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva05g00231	-		-	qsu:112006448	327.791

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva06g01526	06	10974032	10976108	Bva05g00231	05	1128774	1130821	ECH
	Bva05g00231	05	1128774	1130821	Bva05g00231	05	1128774	1130821	ECH