Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva05g00142 ATGGCTACGTTGAAATGTTCAATGTTGGTGGCACTGATAGTAGTGCTTGTTTATGTTGATTCAGTATCTTCAACATCTAGATCAGGAGCCTTAAATCCTCAAGCATTTCGCCGAGGCGGGTTACGCGTCAAGCTCCAGCACGTTGATGCAGGTAAAAACTTAACCAAACTGGAGCGTGTTCGGCACGGCATCAAGCGTGGGAATCATAGGTTGGAAAGGTTAAATGCCATGGTGTTGGCAGCTGCATCGCCCGACTCGGAACTGGAAGCCCCTATACATGCGGGGAATGGTGAGTATCTGATGACTTTATCTATTGGTACTCCACCGCAGGAATATTCTGCAGTGTTGGACACTGGCAGTGATCTAATATGGACTCAGTGTAAGCCTTGCAGCCAATGTTACAAGCAACCCACACCCATTTTTGATCCCCAACTGTCTTCTACTTTTTCTAAACTATCATGCAGCAGTGATCTATGCAGTTCGCTACCCTCCTCTACTTGCAGTGACGGCTGCCAATATGTGTACGCGTACGGTGATTATTCAATGACACAAGGCATTTTGGGCACGGAGACCTTCACTCTTGGGGACTCCGGCAACCAAGTTTCGGTTCAGAATATTGGGTTCGGTTGCGGAGAAGACAATGAAGGAAATGGATTCGAGCAAGCTTCGGGTCTAGTGGGACTTGGGCGTGGACCGTTGTCTTTGGTTTCCCAGCTAAAAGAGTCCAAGTTCTCATATTGCTTGACTTCCATGGAGGACTCCAAAACAAGTACTCTGTTTTTGGGAAGCATGAATAGCAGCTCAAAAGGAGCACTGACGACCCCTCTACTCAGGAACCCATCACAGCCATCTTTTTACTACCTTTCCCTTGAAGGAATTACTGTGGGCGACACTCGTTTGTCGATTGAGAAATCCACTCTTGAGTTTTCAGATGATGGCAGAGGTGGAGTAATCATAGACTCTGGCACAACAATCACCTATATTGAACAGAGTGCTTTTGCTGAACTCAAGAAAGAGTTCACATCTCAAACAAAACTTGCGGCGGACGATTCTGGTTCAACTGGGCTTGATGTTTGCTTTACTTTGCCATCGGGGACAACCCAAGTGGAAATCCCCAAGTTGGTTTTCCATTTCAAAGGTGCAGATTTGGAGTTGCCTGCAGACAACTATATAATTGCCGATTCAAATTTAGGACTGGCTTGCTTAGCCATGGGAGCTTCCAGTGGCATGTCTATATTTGGCAACATTCAACAGCAGAACATGTTGGTGAACCATGATCTTGAGAAGGAAACCATTTCTTTCATCCCTGCACAGTGTGACGACTTGTG 1328 0.4631 MATLKCSMLVALIVVLVYVDSVSSTSRSGALNPQAFRRGGLRVKLQHVDAGKNLTKLERVRHGIKRGNHRLERLNAMVLAAASPDSELEAPIHAGNGEYLMTLSIGTPPQEYSAVLDTGSDLIWTQCKPCSQCYKQPTPIFDPQLSSTFSKLSCSSDLCSSLPSSTCSDGCQYVYAYGDYSMTQGILGTETFTLGDSGNQVSVQNIGFGCGEDNEGNGFEQASGLVGLGRGPLSLVSQLKESKFSYCLTSMEDSKTSTLFLGSMNSSSKGALTTPLLRNPSQPSFYYLSLEGITVGDTRLSIEKSTLEFSDDGRGGVIIDSGTTITYIEQSAFAELKKEFTSQTKLAADDSGSTGLDVCFTLPSGTTQVEIPKLVFHFKGADLELPADNYIIADSNLGLACLAMGASSGMSIFGNIQQQNMLVNHDLEKETISFIPAQCDDL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva05g00142 442 Pfam Xylanase inhibitor N-terminal 99 263 IPR032861 -
Bva05g00142 442 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 317 328 IPR001969 GO:0004190|GO:0006508
Bva05g00142 442 Pfam Xylanase inhibitor C-terminal 286 434 IPR032799 -
Bva05g00142 442 Gene3D Acid Proteases 261 442 IPR021109 -
Bva05g00142 442 SUPERFAMILY Acid proteases 92 440 IPR021109 -
Bva05g00142 442 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 114 125 IPR001969 GO:0004190|GO:0006508
Bva05g00142 442 ProSiteProfiles Peptidase family A1 domain profile. 99 435 IPR033121 -
Bva05g00142 442 CDD pepsin_A_like_plant 98 439 IPR034161 -
Bva05g00142 442 PRINTS Pepsin (A1) aspartic protease family signature 105 125 IPR001461 GO:0004190|GO:0006508
Bva05g00142 442 PRINTS Pepsin (A1) aspartic protease family signature 317 328 IPR001461 GO:0004190|GO:0006508
Bva05g00142 442 Gene3D Acid Proteases 81 260 IPR021109 -
Bva05g00142 442 PANTHER OS07G0603500 PROTEIN-RELATED 13 441 - -
Bva05g00142 442 PANTHER OS08G0469000 PROTEIN 13 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva05g00142 Bva-Chr5 705444 707303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva05g00142 97 442 Miscellaneous Gene Families AT1G77480 27.415 3.95e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva05g00142 - - gmx:100811294 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva05g00142 05 705444 707303 Bva05g00142 05 705444 707303 ECH
Bva05g00142 05 705444 707303 Bva06g01652 06 11637250 11638813 ECH