Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g03293 ATGGCGCACGAGACCCAAACCCTTACAGTTACCGACTCTGAAAGCCAAGATTCTAACTCGGCCGATGAAACCCCTCCTTCCCTCCCAGGCCCCCTTTCTTCTCCCATCCAAAACCCTAGCTCTCCTAATCTGGCCACAGATTCTGATTCCAACCGAATTTCATCCCTCCTACATCTCTCCTTCAACCAGGATTCCGGTTGCTTTGCCGCAGGAACCGATCATGGCTTCCGTATCTACAATTGTGATCCTTTTCGTGAGATCTTTAGGCGGGATTTCGGTCCCGGTGGTGGAATTGGATTGGTCCAGATGTTGTTTCGGTGCAACATACTTGCCTTTGTGGGCGGTGGTTCTGACCCGAGGTATCCAGTTAATAAAGTGATGATTTGGGACGACCATCAGTCCCGGTGCATCGGCGAGCTTTCATTTCGATCTGAGGTCAAAGGGGTTCGTCTCAGAAGGGACCGAATAGTGGTTGTCCTTGCGCATAAGATTTTTGTATACAATTTTGCCGATCTTAAGGTGTTGCACCAAATTGAGACAATTGCCAACCCCAAGGGACTTTGTGAGGTTTCGCATGTTTCAGGGACAATGGTGTTGGTATGTCCTGGACTACAGAAGGGTCAGGTAAGGGTCGAGCATTACGCGTCTAAGCGGACTAAGTTTATAATGGCGCACGATTCGAGGATTGCTTGCTTCGCGCTCACGCAGGATGGGCGATTGCTTGCCACGGCAAGCAGTAAGGGGACTCTCGTCAGGATTTTCAATACTTTGGATGCTTCACTGCTCCAGGAGgtaCGGAGAGGGGCAGACCGAGCTGAGATATACAGCCTTTCTTTTTCCGCCACTGCACAATGGTTAGCTGTCTCGAGTGACAAGGGAACTGTTCATGTCTTTGGCTTAAAGGTTGATTCAGGATTATTGGGGCATGATAGATCATGTAATGCATCTGAGTCTAACGCCACGAATCCATCAGCAgtttcatctctttcttttatcaaagGTGTGCTGCCCAAGTATTTCAGCTCAGAGTGGTCTGTGGCTCAGTTTCGCCTGCATGAAGGTGTGCAATATGTTGTTGCCTTCGGCCACCAAAAGAACACAATTGTAATACTTGGCATGGATGGCAGCTTCTATCGATGCCAGTTTGACCCAGTAACCGGTGGAGAGATGACCCAGCTTGAATATTACAATTTCCTTAAGCCAGAGGAATCATTCTA 1217 0.479 MAHETQTLTVTDSESQDSNSADETPPSLPGPLSSPIQNPSSPNLATDSDSNRISSLLHLSFNQDSGCFAAGTDHGFRIYNCDPFREIFRRDFGPGGGIGLVQMLFRCNILAFVGGGSDPRYPVNKVMIWDDHQSRCIGELSFRSEVKGVRLRRDRIVVVLAHKIFVYNFADLKVLHQIETIANPKGLCEVSHVSGTMVLVCPGLQKGQVRVEHYASKRTKFIMAHDSRIACFALTQDGRLLATASSKGTLVRIFNTLDASLLQEVRRGADRAEIYSLSFSATAQWLAVSSDKGTVHVFGLKVDSGLLGHDRSCNASESNATNPSAVSSLSFIKGVLPKYFSSEWSVAQFRLHEGVQYVVAFGHQKNTIVILGMDGSFYRCQFDPVTGGEMTQLEYYNFLKPEESF 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g03293 405 PANTHER WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED 34 405 - -
Bva04g03293 405 Gene3D - 57 387 IPR015943 GO:0005515
Bva04g03293 405 SMART WD40_4 215 255 IPR001680 GO:0005515
Bva04g03293 405 SMART WD40_4 46 80 IPR001680 GO:0005515
Bva04g03293 405 SMART WD40_4 342 381 IPR001680 GO:0005515
Bva04g03293 405 SMART WD40_4 258 299 IPR001680 GO:0005515
Bva04g03293 405 MobiDBLite consensus disorder prediction 1 48 - -
Bva04g03293 405 MobiDBLite consensus disorder prediction 1 27 - -
Bva04g03293 405 SUPERFAMILY WD40 repeat-like 54 379 IPR036322 GO:0005515
Bva04g03293 405 PANTHER AUTOPHAGY-RELATED PROTEIN 18A-LIKE ISOFORM X1 34 405 - -
Bva04g03293 405 Pfam WD domain, G-beta repeat 273 298 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g03293 Bva-Chr4 26522562 26525763 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g03293 K22991 - gmx:100787427 640.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva13g03303 13 22817405 22820836 Bva04g03293 04 26522562 26525763 ECH
Bva04g03293 04 26522562 26525763 Bva04g03293 04 26522562 26525763 ECH