Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02978 ATGGGAGTTGTTACGGTTGGTGAATTAAAGCCCTGCATTTCAGTGAAGAGGTCCTTTCGTCCAAGTATAAGACATGCCACTGAATGGCCAATATCTGATGTCTCCAGCGATCTTACCATTGAAGTTGGAGCATCGAGCTTTGCACTTCACAAGTTTCCTCTAGTTTCTAAGAGTGGAAGAATTCGGAAACTGCTTTTAGAAGCAAAGGATTCAAAAGTTTCACGCATAAGTCTCCCAAGCGTGCCAGGTGGAGCAGAGGCTTTTGAGTTAGCTGCCAAGTTCTGTTATGGAATTAACGTTGAGTTCACCCTCTCAAATGTTGCTATGCTACGTTGTGTGGCGCATTTTCTTGAAATGACTGAAGAATTTTCAGAGAAAAACTTGGAGACCCGAGCTGAAGCGTATCTAAAAGAGACAGTTCTCCCTAATATATCAAGCTTAATATCTGTTCTTCATCGTTGTGATACTCTTCTGCCCACAGCAGAAGAGATAAACCTTGTTGCTAGGCTAATCAATGCAATTGCAAATAATGCATGCAAGGAGCAGCTCACCTCTGGTTTGCTAAAACTTGACCATAATTTCCCTGCGAAAGCTATCTCACACATGGAACCGGAAACACCTTCAGACTGGTGGGGGAAATCTCTTTCAGTTCTTAATCTTGACTTCTTCCAACGCGTTCTGACTGCAGTTAAGTCAAAAGGGTTAAGACAGGACATGATCAGCAAGATTTTGATAAACTACGCTCATAATTCTCTTCAGGGAATTGTTGGTAAGGACCCCCAAGTGGTCAAAGGAAGTGTACTGGACTTAGAATTGCAGAAGAAGCAAAGGGTCATTGTTGAAGCCATAGCTGGTTTACTACCAACTCAATCAAGGAAAAGCCTAGTTCCAATGGCATTTCTATCAAGTTTGTTGAAAGCTGCAATATCAGCTTCAGCATCCATTTCTTGCAGATCTGATTTGGAGAGGCGGATTGGTCTGCAACTTGACCAAGCCATTCTTGAAGACATCTTAATTCCAGCAAATTCACACCAAAATGGCCACAGCACATTGTATGATACAGAGTCAATCTTGAGgatcttttccattttcctaAACTTGGATGAGGATGATGAGGAAGATAGTCACTTGAGAGATGAAAGTGAAATGGTGTATGACTTTGACAGCCCTGGATCTCCAAAACAAAGCTCAATTCTAAAGGTATCCAAGTTGTTGGACAATTATCTTACTGAAGTAGCACTAGACCCAAATCTGTTGCCATCAAAATTCATAGCACTTGCAGAACTACTTCCAGACCATGCACGCATTGTAAGCGATGGACTGTACAGAGCTGTCGACATCTACCTTAAGGTTCATCCAAACATAAAGGACTCAGAGCGGTACCGCCTATGCAAAACCATTGACTGTCAGAAATTATCTCAAGAAGCCTGCAGTCATGCAGCACAGAATGAAAGGCTACCAGTGCAGATGGCTGTCCAAGTTCTTTACTTCGAGCAAATCAGGCTTCGAAATGCCATGAATGGAGGACATAATCAGTTCCTATTTGGTGGACTCAATGGCCAATTCCCTCAACGTTCAGGCAGTGGCGCAGGAAGTGGAGCCATTTCTCCCAGGGATAATTATGCATCTGTAAGAAGAGAGAACCGTGAGTTGAAGCTAGAAGTTGcaagaatgagaatgagaCTCACTGACTTGGAGAAAGATCACGTCTCTATGAAGCAGGAGCTAGTGAAGTCCCATCCTGctaataagttatttaaatcatttaccAAGAAATTAAGCAAGCTCAATTCTCTATTTCGGATCAATAGTATAAAGCCAATTGGAGGCAAAACTAGTTCAGAAAGCCGGTTCCCATTTCAAAAGCGAAGACGTCACTCAGTTTCATG 1889 0.4145 MGVVTVGELKPCISVKRSFRPSIRHATEWPISDVSSDLTIEVGASSFALHKFPLVSKSGRIRKLLLEAKDSKVSRISLPSVPGGAEAFELAAKFCYGINVEFTLSNVAMLRCVAHFLEMTEEFSEKNLETRAEAYLKETVLPNISSLISVLHRCDTLLPTAEEINLVARLINAIANNACKEQLTSGLLKLDHNFPAKAISHMEPETPSDWWGKSLSVLNLDFFQRVLTAVKSKGLRQDMISKILINYAHNSLQGIVGKDPQVVKGSVLDLELQKKQRVIVEAIAGLLPTQSRKSLVPMAFLSSLLKAAISASASISCRSDLERRIGLQLDQAILEDILIPANSHQNGHSTLYDTESILRIFSIFLNLDEDDEEDSHLRDESEMVYDFDSPGSPKQSSILKVSKLLDNYLTEVALDPNLLPSKFIALAELLPDHARIVSDGLYRAVDIYLKVHPNIKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQFLFGGLNGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTKKLSKLNSLFRINSIKPIGGKTSSESRFPFQKRRRHSVS 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02978 629 Pfam NPH3 family 209 477 IPR027356 -
Bva04g02978 629 Pfam BTB/POZ domain 35 136 IPR000210 GO:0005515
Bva04g02978 629 ProSiteProfiles BTB domain profile. 36 104 IPR000210 GO:0005515
Bva04g02978 629 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 23 622 - -
Bva04g02978 629 ProSiteProfiles NPH3 domain profile. 209 501 IPR027356 -
Bva04g02978 629 PANTHER OS12G0117600 PROTEIN 23 622 IPR043454 -
Bva04g02978 629 SUPERFAMILY POZ domain 23 121 IPR011333 -
Bva04g02978 629 Gene3D Potassium Channel Kv1.1; Chain A 27 142 IPR011333 -
Bva04g02978 629 Coils Coil 541 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02978 Bva-Chr4 25020370 25024230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02978 1 451 EF-hand Containing Proteins AT2G47860 59.794 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02978 - - qsu:112019220 1061.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02978 04 25020370 25024230 Bva13g02930 13 21076410 21080015 BWGD