Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02844 ATGCTTTTCCCTAAGGAAGAAGAATACATAGAATGGTTCGAGAAGGCAGGATTTAAGGATGTCCAACTAAAAAGGATTGGCCCAAAATGGTACCGTGGGGTTCGTCGTCATGGCTTGATTATGGGTTGTTCTGTGACTGGTGTTAAACCTGCATCTGGAGATTCACCTTTGCAGCAAGAAATGGCAGAAGCACTATCAGAAGAACAGGTTGCTGAGTTCCGGGAAGCCTTTTGCCTCATTGACAAGGACTCTGACGGATACATTACCGTGGACGAACTGACAACTATGATTCAATCCTTGGATGGACACCCATcgaaggaagaaattgaagaaatgatTAGTGAGGTAGATATAGATGGAAATGGAAGTATAGATTTTGGGGAGTTCTTGAACATCATGGGCAGAAAAATGAAGGAAAATTTGGCAGAGGAGCTCAGAGAAGCATTCAAAGTGTTTGATAGAGATCAAGATGGATATATATCAGCCACTGAGCTAAGACAAGTAATGATGAACTTGGGAGAAAGGCTTACAGATGAAGAGGCTGAGCAAATGATTGGAGAGGCAGATTTGGATGGAGATGGTCAAGTTAGCTACGAAGAATTCCAAAAGATGATGATGCTCAATTCATG 629 0.4086 MLFPKEEEYIEWFEKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQQEMAEALSEEQVAEFREAFCLIDKDSDGYITVDELTTMIQSLDGHPSKEEIEEMISEVDIDGNGSIDFGEFLNIMGRKMKENLAEELREAFKVFDRDQDGYISATELRQVMMNLGERLTDEEAEQMIGEADLDGDGQVSYEEFQKMMMLNS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02844 209 ProSiteProfiles EF-hand calcium-binding domain profile. 176 209 IPR002048 GO:0005509
Bva04g02844 209 CDD EFh 144 206 IPR002048 GO:0005509
Bva04g02844 209 Pfam EF-hand domain pair 143 205 IPR002048 GO:0005509
Bva04g02844 209 Pfam EF-hand domain pair 73 133 IPR002048 GO:0005509
Bva04g02844 209 Coils Coil 162 182 - -
Bva04g02844 209 Gene3D - 139 209 - -
Bva04g02844 209 ProSiteProfiles EF-hand calcium-binding domain profile. 140 175 IPR002048 GO:0005509
Bva04g02844 209 Gene3D - 53 138 - -
Bva04g02844 209 ProSitePatterns EF-hand calcium-binding domain. 81 93 IPR018247 -
Bva04g02844 209 SUPERFAMILY EF-hand 58 207 IPR011992 -
Bva04g02844 209 ProSiteProfiles EF-hand calcium-binding domain profile. 68 103 IPR002048 GO:0005509
Bva04g02844 209 CDD EFh 72 133 IPR002048 GO:0005509
Bva04g02844 209 ProSitePatterns EF-hand calcium-binding domain. 117 129 IPR018247 -
Bva04g02844 209 PANTHER CALMODULIN-LIKE PROTEIN 9 61 206 - -
Bva04g02844 209 ProSiteProfiles MPBQ/MBSQ family SAM-binding methyltransferase profile. 1 46 IPR031164 GO:0032259
Bva04g02844 209 SMART efh_1 180 208 IPR002048 GO:0005509
Bva04g02844 209 SMART efh_1 108 136 IPR002048 GO:0005509
Bva04g02844 209 SMART efh_1 72 100 IPR002048 GO:0005509
Bva04g02844 209 SMART efh_1 144 172 IPR002048 GO:0005509
Bva04g02844 209 PRINTS Recoverin family signature 136 155 - -
Bva04g02844 209 PRINTS Recoverin family signature 112 133 - -
Bva04g02844 209 PRINTS Recoverin family signature 158 176 - -
Bva04g02844 209 ProSitePatterns EF-hand calcium-binding domain. 189 201 IPR018247 -
Bva04g02844 209 ProSiteProfiles EF-hand calcium-binding domain profile. 104 139 IPR002048 GO:0005509
Bva04g02844 209 PANTHER CALCIUM BINDING PROTEIN 61 206 - -
Bva04g02844 209 ProSitePatterns EF-hand calcium-binding domain. 153 165 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02844 Bva-Chr4 24352258 24355389 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02844 61 206 EF-hand Containing Proteins AT3G56800 61.905 2.66e-62 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02844 K02183 K13448 gmx:100527005 249.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02844 04 24352258 24355389 Bva13g02775 13 20276383 20277225 BWGD