Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02816 ATGCAAAGGGGTTTTGTTTCAgCTATCGAATCCTTTTTCTCTCCTCGCTCATCGACGTTTCTCGAATCATCAAATACAGTTGGTATGGCTGAGGAAAATTTTGATGGACAGGATATAGGCTATGTGCCTGAGAACCCCATTTTCCCACAGAATGACTCTGATGAGCACGATGCTGGAAATGAGATCGATAACTCTGGGTTTCCTCAACAAGAATCTGATGAACGTGATGTTGGTAATGTTGTTGAGGACCCCAATCCACCAGAAAATCATTATGGTGGAGATGAAGATGTAGGAGATTTTCCCAAAACTTCTGATTCTCCACAGGAGCATATTGACCAACATCCTGATGTGGGGGATATTCCTGAGCGTTTCGGTTCTCCACAGAGACtgggtttcgacaatgattcaaaaggaaatgaaataaaaaggtgGCCAGGGTGGCCTGGAGAAAACGTTTTCAGGATGTTGGTCCCTGTTCAAAAGGTTGGCAGTATTATTGGCCGCAAGGGCGAGTTTATCAAGAAAATTACTGAAGAGACTAAAGCTCGGATTAAAATCCTTGATGGTCCACCAGGAACCCCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCGGATCGATCTGTACCACCTGCTGTAGATGGTTTGTTAAGGGTTCATAAACAGATTGTCAATGTTGATCGTGATGCTGCAGATGGTACATCGGCTGCAGGGCGCTCAATTGTCACAAGACTTCTGGTGGCAGATACCCAAGCAGGAAGCTTGATTGGGAAGCAGGGGTCCACTATTAAGACAATTCAGGACACTTCCGGTTGCACTATACGAGTTCTTGGATCAGAACACTTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTAGAGATACAAGGGGAACCTACTGGAGTTCACAAGGCAATTGAACTTATTGCAACTCATCTACGAAAATTCTTGGTTGACCGCAGTATAGTTGGAGTATTTGAATCACAGATGCAAATGACAGATGCTCGAGTGAACCAAAATGTGCCACCACACCAAACTTGGGGTCCTCCTCCTCAAGGGTTTGGAGCTCCTGCTGGTGGTGGGCCTGCTTTTGCTCCTAGTCATCAATATATGCCGCCGCCTTCACATCATTATGATAATTACTACCCACCTGCTGACCTACCTCCAATAGACAAGCACCTTCATCAAGGTCCACCGCCTCCCTATGGAAGGGATGCTTCTATGGGTATTCATCCTGCCACTGCACAACCGCAACAATCTGTTGTGACTAAGGTCACTCAGCATATGCAAATTCCTCTATCATACGCGGATGCTGTTATTGGGACATCAGGTGCCAATATCAGCTATATACGCCGTGCCAGTGGAGCAAGTATTACAATTCAGGAGACAAGGGGTGCCCCAGGGGAGATGACTGTGGAAATTAGCGGGACTGCTTCACAAATACAAACAGCCCAGCAGCTCGTCCAGAATTTCATGGCTGAAGCCGCCAGCTCGGCACAGGACCATATGGGGGGATCAATCAGTCAGGGTTATAATTCTTATCCTGTTAATGCTCCCGTTTATGCATCTCCACCCGCCAATGCTGGGGGTCATGCCGGCCATGCACCTGCCGATTACGGTTCCGTATATGGCACCAATTACGGCTATTA 1652 0.4582 MQTNSNEHIEVVKCSFLCKLSEIVCADFGWKKLYLVMVSAKEEPDRSVPPAVDGLLRVHKQIVNVDRDAADGTSAAGRSIVTRLLVADTQAGSLIGKQGSTIKTIQDTSGCTIRVLGSEHLPVFALRDDSVVEIQGEPTGVHKAIELIATHLRKFLVDRSIVGVFESQMQMTDARVNQNVPPHQTWGPPPQGFGAPAGGGPAFAPSHQYMPPPSHHYDNYYPPADLPPIDKHLHQGPPPPYGRDASMGIHPATAQPQQSVVTKVTQHMQIPLSYADAVIGTSGANISYIRRASGASITIQETRGAPGEMTVEISGTASQIQTAQQLVQNFMAEAASSAQDHMGGSISQGYNSYPVNAPVYASPPANAGGHAGHAPADYGSVYGTNYGY 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02816 388 CDD PCBP_like_KH 81 149 - -
Bva04g02816 388 Gene3D K Homology domain, type 1 76 154 IPR036612 GO:0003723
Bva04g02816 388 SMART kh_6 78 153 IPR004087 GO:0003676
Bva04g02816 388 SMART kh_6 262 332 IPR004087 GO:0003676
Bva04g02816 388 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 36 381 - -
Bva04g02816 388 ProSiteProfiles Type-1 KH domain profile. 79 148 - -
Bva04g02816 388 Gene3D K Homology domain, type 1 252 339 IPR036612 GO:0003723
Bva04g02816 388 ProSiteProfiles Type-1 KH domain profile. 263 327 - -
Bva04g02816 388 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 76 162 IPR036612 GO:0003723
Bva04g02816 388 Pfam KH domain 82 149 IPR004088 GO:0003723
Bva04g02816 388 Pfam KH domain 265 328 IPR004088 GO:0003723
Bva04g02816 388 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 36 381 - -
Bva04g02816 388 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 256 334 IPR036612 GO:0003723
Bva04g02816 388 CDD KH-I 265 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02816 Bva-Chr4 24198359 24201391 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02816 K21444 - gmx:100799901 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02816 04 24198359 24201391 Bva13g02738 13 20086973 20094315 BWGD
Bva04g02816 04 24198359 24201391 Bva04g02816 04 24198359 24201391 ECH