Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02500 atgcGGGGTTTTCTCACCTTGGTCTTGGCCTTAGCCACCGTGCTAGTGCCGTTGTCAGTGGTAAGTGGATTGCCGGGAAGTTTTCTCCCTCTTGAACGGGCTATACCCCTAAGTCAGAGAGTGGAACTGGAAGCACTGAGAGCTCGCGACCGAGCCAGACATGCTCGAATCTTGCAAGGAGTGGTGGGTGGAGTTGTCGACTTCTCAGTCGAAGGGGCCTCCGATCCTTACTCTGTTGGGCTGTATTTTACAAAAGTGAAGCTGGGCTCTCCTCCAAGAGAATTTAACGTTCAAATCGATACTGGCAGTGATATCTTGTGGGTTAATTGCAATACTTGCGGTAATTGCCCTCAATCTAGTGGACTAGGGATTGAGCTCAATTTCTATGATACAGCCATCTCATCCACGGCTGCACTGATTTCCTGCTCAGACCCAGTATGCTTGGCTGCAGCTCAAGGTGCGGCAACTGAATGCTCTCCACAAATTAATCGGTGCAGTTACACCTTTCAATATGGAGATGGAAGCGGGACATCAGGTTATTATGTATCTGATGCCATGAATTTTGACATGATTCTGGGACAGTCTATGCTCGCTAACTCTTCAGCTACCATCGTTTTTGGGTGTAGCATATCTCAGTCTGGAGATTTGACCAAGACAGACAAAGCAGTAGATGGAATTTTTGGATTTGGCCCTGGTGCTCTTTCAGTTATATCACAATTGTCATCACGGAGTATAACACCCAAAGTGTTCTCTCATTGCTTAAAAGGAGAGGGGAATGGAGGAGGCATACTAGTTCTGGGTGAGATTTTGGAGCCAAGTATTGTTTATACTCCACTTGTCCCGTCACAGCCTCATTACAACTTAAATCTGCAGAGCATTTCTGTCAATGGGCAACTTCTGCCAGTTGATCCAGCTGTATTTGCAACATCAAACAACCGAGGAACTATAATTGATTCTGGCACAACCTTGGCATACCTTGTGCAAGAAGCTTATGATCCTTTTGTCAATGCTATAACCACCATTGTATCACAATCTGCCAGTCCTATTATCTCCAAAGGAAACCAGTGTTATCGGGTCCCATTCAGTGTTGGTGATGTATTTCCACAAGTTAGTTTAAACTTTGCTGGTGGAGCATCCATGCTTTTAAAACCAGAACAGTACCTTATGCATTCAGGTTTTGTTGATGGTGCTGCAATGTGGTGTATTGGTTTCCAGAAAGTGCAGGCGGGACTAATAATTTTAGGAGATCTTGTCCTGAAAGATAAGATCTTTGTCTATGATTTGGCTCATCAGCGAATTGGATGGGCTAACTATGATTGTTCCTTGGCTGTAAATGTTTCTGTGACTACAAGCAAGGATGAGTACATCAATGCAGGACAGTTGCATGTGAGCTGCTCACAGGTGGACATTCTCACCAAGTTGCTACCCTTGAGCATTATGATTCTATTTATGCACATAATAGTTATCATCGAGTCCCATTTTTGTTGTGTTTATTCTTGCTTGGGTTATGCATGCTTGCTGATAGCTGGCTCGTGTCCCATTCATCTGACGAAAATTCACATATCATTGTA 1571 0.4411 MRGFLTLVLALATVLVPLSVVSGLPGSFLPLERAIPLSQRVELEALRARDRARHARILQGVVGGVVDFSVEGASDPYSVGLYFTKVKLGSPPREFNVQIDTGSDILWVNCNTCGNCPQSSGLGIELNFYDTAISSTAALISCSDPVCLAAAQGAATECSPQINRCSYTFQYGDGSGTSGYYVSDAMNFDMILGQSMLANSSATIVFGCSISQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRSITPKVFSHCLKGEGNGGGILVLGEILEPSIVYTPLVPSQPHYNLNLQSISVNGQLLPVDPAVFATSNNRGTIIDSGTTLAYLVQEAYDPFVNAITTIVSQSASPIISKGNQCYRVPFSVGDVFPQVSLNFAGGASMLLKPEQYLMHSGFVDGAAMWCIGFQKVQAGLIILGDLVLKDKIFVYDLAHQRIGWANYDCSLAVNVSVTTSKDEYINAGQLHVSCSQVDILTKLLPLSIMILFMHIIVIIESHFW 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02500 495 Gene3D Acid Proteases 269 446 IPR021109 -
Bva04g02500 495 PRINTS Pepsin (A1) aspartic protease family signature 315 326 IPR001461 GO:0004190|GO:0006508
Bva04g02500 495 PRINTS Pepsin (A1) aspartic protease family signature 88 108 IPR001461 GO:0004190|GO:0006508
Bva04g02500 495 PRINTS Pepsin (A1) aspartic protease family signature 412 427 IPR001461 GO:0004190|GO:0006508
Bva04g02500 495 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 458 - -
Bva04g02500 495 SUPERFAMILY Acid proteases 77 442 IPR021109 -
Bva04g02500 495 Pfam Xylanase inhibitor C-terminal 285 436 IPR032799 -
Bva04g02500 495 PANTHER ASPARTYL PROTEASES 5 458 IPR001461 GO:0004190|GO:0006508
Bva04g02500 495 Pfam Xylanase inhibitor N-terminal 82 267 IPR032861 -
Bva04g02500 495 CDD pepsin_A_like_plant 82 440 IPR034161 -
Bva04g02500 495 Gene3D Acid Proteases 67 268 IPR021109 -
Bva04g02500 495 ProSiteProfiles Peptidase family A1 domain profile. 82 436 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02500 Bva-Chr4 22657473 22661673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g02500 77 441 Miscellaneous Gene Families AT1G44130 27.390 4.87e-41 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02500 - - gmx:100820394 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02500 04 22657473 22661673 Bva13g02050 13 16296728 16301726 BWGD
Bva04g02500 04 22657473 22661673 Bva04g02500 04 22657473 22661673 ECH