Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g02471 ATGGAGGCTGGAGAAATAGTCAAAGAGGAACAACAAAAGCAGATTCCTTGGATCCCCACCACCCCTCTCAAGCCAATTCGGTCAAGACCAGTGCCGATCTGCGGTTCTGAAGAAAGAAACCAGCTGAACCAAACAGATTTCCTGGAAGCAAGCTCGTGCTGTAATTCAAGTCATGATTGTCATGCTTCTAGGGTATCTGCATGTTCTGAATCAGCGCCCGGTGCAGAAATAAACAGCAGGCTCCACGACTGGGAAGCACCTGCAGCTGCTGGGACCAAcattgatgataaaaattcTGGAACATATCCACAGCTACGCCATAACCCCATGTCCAGATGGGCTAATACTGGCTGTACTGAACTATTGGCTCTAGCAAATGCTGCATCAGCACATTTCACTGCAACACATCCAGACAATGTTGGAGTCAAGAGTCTCACTTCTGAGTCACTGTTGAACAGAGGCCCTGTGGCCAACCTAAGTAGCGTCTTCACCCACCACGATCTCTCTCAACAGACTGATACCGAAACCATCCATGTCAATCCCCAACAACCTCAGCGCACAGCATCTGTTGGTTTCTGTAGCAAAACCATTTCGCAGCTTGCACCACCTACACCGGACAAGGCCATTAGAGCAGAATGCAGAGAACTTGCAGGAAGACAGTTAAATATGGAAGAGAGAGCTGAAAGGGAAATGAATAATGCCCCTGCTACAAAGCTTGACAACAAAGGAACCTCACAAAACCAGGATATATCTGATTCTGTCTCGGAAATATCATTTGCTGCTGTTTCTATGCCATTAAAGGAGAATCACAACCCTCAAAGGGGAGAAAGCGAAGTGACAGAGCTAAATAAAACACCACAGCAGAaaccaagaagaaagaagcacCGCCCAAAGGTCATCTCAGAAGGCAAACCCAGAAGAACTAAAAGGCCAGTTACCCCAAAACCTGCTCAATCAGAAAAGAACACTGGAAAGAGGAAGTATGTGAGAAGGAAAGGGTTAAATGATACTTCTGTAACTCCACCATCAGAAATGATTGGGCAATCAATTGAGTCAACAAAGCTTGAATCTAACAAAAAGTCATGTAGGAGGgccttaaattttgaaattggaGAGCAACCGATAGatgaaaattctgcatgtAATGAAAACGGTGCAACTATGCGTCTTGGCAATGGGGTGTCACTACCTGAAGACTTGCAATCCCCAGGTGAGTCTActccaaaaaattattctcttgGGGCATCGCATGCTACAAATTctggaaagagaaagagcaaGAGAAAAAGTCAGGTGATGTTGAGTCCAAACGAGTCCAGCAGCAACATTGCTGGAACATTAACAACAGGATTACAGAAGGATTGTTCCAAGAGAAAACATTCTACTACTATTGAACATACTGATACCAGCAGCACGAATCTGATTGGAGCACGCTATAATGGCTTGCAAGCATACCAAGAAGTGTGTGTTCAGTTTCCAAACAttcagaagaaaagaaatggaagggGGCAGACGTCCAAGATATCTACTTTGACAGCACTAGAAGAAAGGACCCGAGATGGTAGGGATCGTACTTATGCATCAAGTTCCAGCAGCTGGACTATTGGTTCTGAATATTATGCAGCTCAAGTTCCAGTCACATTTGAAGCTACTGTTCATAGAGAAACGCAATCGTTTCAGGACTTCTTATCTTTGATTCAGAATTCGACAAGGCCAGCCAAAAGACAATCCAAAGTCCCTGCACAGGCTAATCATTCAACAAAACAACTAGGAAATGATGACAAGCAAACAATTGAGAATGTAGAAAAATCCACATGCAATGATGCATTGGGAGTGGAGACAATGGAACCGCTcatgaaaaagaagcaaactaaaaagaaaagcaccCTTGTAAATTCAGAATATTCTAGCAACAAGGCAACACAACTGTACCAGAATCCTGTCTTGGTCAACTCACTAAATGCCAATGGAAAAAAATCCAGGAAAAATATGCAGACAATGGAGGCGTTAGGAGAGCAATTCAGACATCTAGACATAAACAAAGAAGGCAGTGATTTTGTATGTGAAGAGCAGAATGCTCTCGTCCTTTACAACACACAAATTCAAGAGCATGATGCTCTTGTTCATGCAGGTGGCACCATCATACCCTTCAATAGCTCATTTGATTCCATCAGAAAACGTCCACGCCCTAAAGTTGACCTTGATGATGAGACTAATAGAGTGTGGGAGCTTTTGTTGGCAAATATAAACAATGACGGGATTGATGGCAAAGACAAAGACACGGCAAAATGGTGGGAAGAAGAACGGAGTGTGTTCCGTGGAAGAGCAGATTCATTTGTTGCACGGATGCGTCTCGTACAAGGTGACAGGCGCTTCTCTGCATGGAAAGGATCGGTTGTGGATTCAGTGGTTGGGGTTTTCCTCACACAGAATGTCTCAGACCATCTTTCAAGTTCTGCATTCATATCACTTGCTGCTAAATTTCCTCTTAAGCCTCCAAGCAACTGCAAAAGACACAGTGAGGAAGGCACGAGTTTGGTAGTCAAAGAACCAGAAATGCTCACTGTAGAACCAGAAGAGAACAGACAATGGGAtgggaaaatattaaatcGCTCTATTTATGATGATAACTCTATGACAATAGATATAATTGAGCGTTCTGAAGAAAAAGCTATCAACAGCAATTCTACTGGCACCATCACTGAGGAAGGGCAAGAAAAATCAGATTATGAAGAACCAGGGAAAGAGTCAAATGATGTAGTTTCATCACAGTCTTCTGTCATCTCATCTCAAATGTCAGGAGACTTTACAATTGAACAAAATCCTGAGAAGCTATGGTCATGTACAGATAGCAACTCGGAAGTAGAGGAGCTGTCTAGTACAGCCAAGTACAACCTTTTTGACAATAGCACTTCTTTCAGTAAGCTTTTACAATTACAAATGGCAAATTCAACCATGTTACATGAAGTCACTAGTCAAAGAATTGGGTCATCTGATAACTTGAAGCGAGCATATGTTCAGTCTACAGGCATGAAGCATGACAACCAAACAGAAAACTTAGAAAAATCAGATCTTATACAAGACTCAGTAGCATCCATGAGCCCTTCCAGTGAATGTACTTTGAAAGTGACCAACAACTCGGGAGTACTTGAAGTTCACTGCTTCGATCATTTCAAAACAGAAGCCTCATCAAGTGGCCTCTCAAATAATAAAGATGAGCATAATATGAACAAACCAAGTTCACATATAATAGAGTCCAGAAACCAAGTCACAACTGCCCATTCTCAAAGTACGATATATCCGCTACATCTCAAGGAACAAAACAATGATATGCAGCAAAGCTTGCTCAACAGTTCTGGACAAACCCAAGATCTTATGCAGAAGGCAACAGAATCAGATTCAAGAAACCACAACCCTGCTGTGAGAAATGGAACCAAAGAGATGAGTGCAACCACTATAAAATCAAAGGGCAGGAGGCTTGGAAAgcagaaaaaagagaattttaacTGGGATAGTTTAAGAATAGAAGCAGAAGCTGGggcagagaaaaaagaaaggacagTCAACAACATGGACTCCCTAGACTGGGATGCTGTAAGATGTGCAGATGTCAATGAAATTGCAGAGGCCATCAAGGAAAGAGGAATGAATAACATGTTAGCCGATCGTATCAagAATTTCCTGAATCGCCTGGTTGAAGATCATGGAAGCATTGACTTGGAGTGGTTGAGAGATGTTCAACCAGACCAAGCAAAAGAATTTTTGCTGAGTATAAGGGGACTTGGGTTGAAGAGCGTGGAATGCGTGCGACTTTTGACTCTGCACCATCTTGCATTCCCAGTGGACACAAATGTTGGACGTATAGCAGTACGATTGGGATGGGTACCCCTCCAGCCTCTGCCAGAGTCACTACAGTTGCATCTTCTAGAATTGTACCCAGTGCTGGAATCTATACAAAAATATCTCTGGCCCCGGCTATGCAAGCTAGACCAAAATACATTGTATGAGTTGCATTACCAAATGATTACATTCGGAAAGGTCTTTTGTACAAAGAGCAAACCAAATTGCAATGCATGCCCAATGAGAGGAGAATGCAGACACTTTGCAAGTGCATTTGCTAGTGCAAGGCTTGCCCTACCAGGACCAGAGCAAAGAAGTATAGTTAGCATGGCAGGAGACAGTGCAATTGATCAGAACCCCTCTATAGTCACTAGTTTGTTGCCCTTGCCTCTCCCAGAATACGCAAAACAACcggaagaaattcaacaaacaGAAGTGTGCGGACAACTGGATGCAAAATCTGGAATAAATATATGCCAACCTATTATTGAAGAGCCAGCAACCCCAGAGCCAGAGTGCACACAAATATCAGaaaaagatattgaggatAGCTTCTGTGAGGATCGTTGTGAAATTCCTACCATCAAACTTAACTTCGAAGAGTTCACTctgaatttacaaaattttatgcaaCATAATATGGAGATCCAGGAAGGAGAAATGTCAAAGGCGTTGGTTGCTCTGGATCCAGAAGCTGCTTCCATTCCAATGCCCAAGCTGAAGAATGTGAGCAGATTACGAACAGAGCACTGTATCTATGAACTCCCAGATGATCACGCTCTCCTAGAAGGGTGGGACAAGCGAGAACCTGATGATCCATGCAGTTACCTTCTTGCTATATGGACCCCAGGCGAGACAGCAAATTCTATACAGCCACCTGAAAGTAAATGCAGCTCCCAAGAATATGGCAAACTCTGTAACGATAAGGAATGTTTCTCATGCAATAGTGTTCGTGAAGCAAATATGCAGATAGTTCGAGGGACAATCCTGATACCATGTCGAACAGCAATGAGAGGGAGGTTTCCACTAAATGGCACCTATTTTCAAGTCAATGAGGTATTTGCTGACCATGATTCAAGTCTCAATCCAATCAATGTTCCCCGAGGTTTGATCTGGACACTCAGAAGGCGAACAGTATATTTTGGAACCTCGATCCCAACAATATTCAAAGGTTTATCAACTCAAGAAATTCAACACTGCTTTTGGAGAGGACATGTTTGTGTGCGGGGATTTGACAGGAAAACAAGAGCACCCCGTCCTCTGATGGCTAGACTACACTTCCCAGCTAGCAAGTTGGCCAAGAACAAAGAGAAGACAGATAGCAATTA 5168 0.4096 MEAGEIVKEEQQKQIPWIPTTPLKPIRSRPVPICGSEERNQLNQTDFLEASSCCNSSHDCHASRVSACSESAPGAEINSRLHDWEAPAAAGTNIDDKNSGTYPQLRHNPMSRWANTGCTELLALANAASAHFTATHPDNVGVKSLTSESLLNRGPVANLSSVFTHHDLSQQTDTETIHVNPQQPQRTASVGFCSKTISQLAPPTPDKAIRAECRELAGRQLNMEERAEREMNNAPATKLDNKGTSQNQDISDSVSEISFAAVSMPLKENHNPQRGESEVTELNKTPQQKPRRKKHRPKVISEGKPRRTKRPVTPKPAQSEKNTGKRKYVRRKGLNDTSVTPPSEMIGQSIESTKLESNKKSCRRALNFEIGEQPIDENSACNENGATMRLGNGVSLPEDLQSPGESTPKNYSLGASHATNSGKRKSKRKSQVMLSPNESSSNIAGTLTTGLQKDCSKRKHSTTIEHTDTSSTNLIGARYNGLQAYQEVCVQFPNIQKKRNGRGQTSKISTLTALEERTRDGRDRTYASSSSSWTIGSEYYAAQVPVTFEATVHRETQSFQDFLSLIQNSTRPAKRQSKVPAQANHSTKQLGNDDKQTIENVEKSTCNDALGVETMEPLMKKKQTKKKSTLVNSEYSSNKATQLYQNPVLVNSLNANGKKSRKNMQTMEALGEQFRHLDINKEGSDFVCEEQNALVLYNTQIQEHDALVHAGGTIIPFNSSFDSIRKRPRPKVDLDDETNRVWELLLANINNDGIDGKDKDTAKWWEEERSVFRGRADSFVARMRLVQGDRRFSAWKGSVVDSVVGVFLTQNVSDHLSSSAFISLAAKFPLKPPSNCKRHSEEGTSLVVKEPEMLTVEPEENRQWDGKILNRSIYDDNSMTIDIIERSEEKAINSNSTGTITEEGQEKSDYEEPGKESNDVVSSQSSVISSQMSGDFTIEQNPEKLWSCTDSNSEVEELSSTAKYNLFDNSTSFSKLLQLQMANSTMLHEVTSQRIGSSDNLKRAYVQSTGMKHDNQTENLEKSDLIQDSVASMSPSSECTLKVTNNSGVLEVHCFDHFKTEASSSGLSNNKDEHNMNKPSSHIIESRNQVTTAHSQSTIYPLHLKEQNNDMQQSLLNSSGQTQDLMQKATESDSRNHNPAVRNGTKEMSATTIKSKGRRLGKQKKENFNWDSLRIEAEAGAEKKERTVNNMDSLDWDAVRCADVNEIAEAIKERGMNNMLADRIKNFLNRLVEDHGSIDLEWLRDVQPDQAKEFLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQNTLYELHYQMITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQRSIVSMAGDSAIDQNPSIVTSLLPLPLPEYAKQPEEIQQTEVCGQLDAKSGINICQPIIEEPATPEPECTQISEKDIEDSFCEDRCEIPTIKLNFEEFTLNLQNFMQHNMEIQEGEMSKALVALDPEAASIPMPKLKNVSRLRTEHCIYELPDDHALLEGWDKREPDDPCSYLLAIWTPGETANSIQPPESKCSSQEYGKLCNDKECFSCNSVREANMQIVRGTILIPCRTAMRGRFPLNGTYFQVNEVFADHDSSLNPINVPRGLIWTLRRRTVYFGTSIPTIFKGLSTQEIQHCFWRGHVCVRGFDRKTRAPRPLMARLHFPASKLAKNKEKTDSN 1722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g02471 1722 PANTHER ROS1, PUTATIVE-RELATED 321 385 - -
Bva04g02471 1722 PANTHER ROS1, PUTATIVE-RELATED 2 319 - -
Bva04g02471 1722 SMART endo3end 1179 1347 IPR003265 GO:0006284
Bva04g02471 1722 SUPERFAMILY DNA-glycosylase 774 1370 IPR011257 GO:0003824|GO:0006281
Bva04g02471 1722 MobiDBLite consensus disorder prediction 1119 1151 - -
Bva04g02471 1722 Gene3D Hypothetical protein; domain 2 1172 1269 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 225 250 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 336 350 - -
Bva04g02471 1722 PANTHER ROS1, PUTATIVE-RELATED 1123 1719 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 399 420 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 1119 1162 - -
Bva04g02471 1722 Coils Coil 1709 1722 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 377 464 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 268 350 - -
Bva04g02471 1722 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 433 1100 IPR044811 GO:0019104|GO:0035514|GO:0080111
Bva04g02471 1722 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 1123 1719 IPR044811 GO:0019104|GO:0035514|GO:0080111
Bva04g02471 1722 PANTHER ROS1, PUTATIVE-RELATED 433 1100 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 288 303 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 432 452 - -
Bva04g02471 1722 Pfam RRM in Demeter 1607 1707 IPR028925 -
Bva04g02471 1722 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 2 319 IPR044811 GO:0019104|GO:0035514|GO:0080111
Bva04g02471 1722 MobiDBLite consensus disorder prediction 889 924 - -
Bva04g02471 1722 MobiDBLite consensus disorder prediction 570 594 - -
Bva04g02471 1722 Gene3D - 1270 1385 IPR023170 -
Bva04g02471 1722 CDD ENDO3c 1195 1313 IPR003265 GO:0006284
Bva04g02471 1722 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 321 385 IPR044811 GO:0019104|GO:0035514|GO:0080111
Bva04g02471 1722 Pfam Permuted single zf-CXXC unit 1573 1604 IPR028924 -
Bva04g02471 1722 SMART ccc3 1348 1368 IPR003651 GO:0051539
Bva04g02471 1722 MobiDBLite consensus disorder prediction 570 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g02471 Bva-Chr4 22520464 22530108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g02471 - - gmx:100787368 1645.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02471 04 22520464 22530108 Bva13g02081 13 16493226 16503944 BWGD
Bva04g02471 04 22520464 22530108 Bva04g02471 04 22520464 22530108 ECH