LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva04g01958	ATGGGCGCTAGTCGAAAGCTTCAGGGAGAGATAGATCGTGTTCTGAAGAAGGTCCAAGAAGGCGTTGAAGTCTTCGATAGTATATGGAAcaagGTTTATGATACCGACAATGCAAATCAGAAGGAGAAATTTGAGGCCGACTTGAAGAAGGAGATTAAGAAGCTTCAGAGGTACAGAGACCAGATTAAGACTTGGATTCAGTCCAGCGAGATCAAGGACAAGAAGGTCAGTGCCTCTTATGAACAGGCTCTGGTGGATGCTCGTAAGCTCATTGAACGTGAAATGGAAAGATTTAAGATCTGTGAAAAGGAGACTAAGACCAAAGCATTCTCCAAAGAAGGCTTGGGCCAACAGCCTAAAACTGACCCAAAGGAGAAGGCAAAATCAGAGACCAGGGATTGGTTGAACAATGTGGTTGGAGAGTTAGAATCTCAGATTGACAGCTTTGAAGCTGAAGTTGAAGGGCTCACTGTCAAGAAAGGAAAGACAAGACCACCCAGATTGACACATCTAGAGACGTCAATTACTAGACACAAGGCTCATATAAAGAAATGTGAACTGATCTTGAGGCTACTGGATAACGATGAATTAAGTCCTGAACAGGTTAATGATGTCAAAGATTTCTTGGAAGATTATGTGGAGCGTAATCAGgaGGACTTTGATGAATTTAGTGATGTTGATGAACTTTATAGTTCATTACCTTTAGACAAAGTGGAGTCTCTTGAAGATCTCGTTACAATTAAGGGAACAGCAGTTAGTGTGAAGACGACTTTGCCAGCATCAGCATCACAAACATCTGGTGCTTCTGTTCAGGAGCAAGCTGATGATATAACTTCCCAGGATAGCAATTCTGATATTGTTGCTAGAACTCCACCTTCAAAAAGTAGTGGAATTAGTTCTGCTGCTTCAACACCTGTTGCGAACGATCCCACTCCTGTTTTGAATGTCTTGGCTCATAACCCATCAGGTGCACCAACTCCTGTGTCAGTCCTCCCTGGTTCAAGCTCTGTTCGGACTGCCGTGGAGAATGCTACCACTGCTTCCAATTCTTTATCTTCTGTAATTCAATCTACTTCtacaaaggaagaagagatcAATAGCTTTCCTGGGCGGAGACTATCTCCTTCACTTTCTGATGCTGGGCTTATGAGGGGAATTGGCAGAAACAGCCTCTCAAATCAAGCTACATCTAGTATCCCCCTTGGTCCTGCTAACATGATTTCCAGCAATGGGTCCCTTGGTTCAGTCCCTTCAGCATCTGAAATAACTAAGAGAAACATATTGGGAGCCGATGATAGACTCGGAAGTACTGGGATGGTGCAGCCTCTTGTATCCCCCATGAGCAATAGAATGATCTTGCCTCAGGCTGTAAAGGCTAATGACGTTGCTGGCTCAGTTGATTCTGGTAATGTTAATGAGGCTGCAGCTGTGTCTGGAAGAgttttttctccttctgtGGTTCCTGGCATGCAATGGAGACCTGGAAGCCCCTTTCAGAACCAGAATGAAGCGGGGCAGCTTCGTGGAAGAACTGAGATAGCTCCGGAtcaaagagagaaatttttgCAGAAGTTTCAGCAAGTGCAGCAACAAGGGCATAGTACCCTCCTTGGAATGCCTTCCCTTGGTGGAGGAAATCATAAGCAGTTTTCTGCCCAGCAGCAAAACTCTCTTTTGCAGCAGTTTAACTCTCAAGGCTCGACTATTTCTTCCCAATCTGGTCTGGGACTTGGAGTTCAAGCAACAGGTCTCAGTGGTATATCATCTCCCTCGTTGCAGCAGCCACCAAATTCTATACATTCTGCATCTAGCCAACAGCCACTAATGTCAAGTGTTTCTAAGGATGGTGatATTGGCAGTTCCAAGGTCGAAGAGCAGCAACAACAGCAAAATCTTCCTGATGATTCAGCTACTGAATCTACTGCTAGTACCGGGCTTGGCAAGAATCTCATAAATGAGGATGATCTGAAATCCCCATATGCTGTGGATTCTCCTGCAGGAGTATCTGGCTCTCTTCCTGAGCCTGTTCAAGCTTCTATAGATACTGATCTGTCTCCCGGCCAACCTTTACAATCCAGCCAACCTTCTGGAAACCTTGGTGTAATTGGAAGGAGAAGTGCCGCAGACCTTGGAGCCATTGGAGATAACTTTAGTGGATCAAGTGTTAACTCTGGAGGAGTCCGTGATCAGTCATACTATTTGAAGATGCTTGATGCAGCGTACTACAAACTTCCACAACCTAAAGACTCAGAACGTCCTAGGATTTATACTCCTAGGCACCCGACAGCAACCCCTCCTAGTTATCCGCAAGTGCAGGCACCAATAGTTAATAATCCTGCCTTTTGGGAGAGAGTAGGGCTCGAACCATATGGCACTGATACCCTGTTCTTTGCATTTTATTACCAGCAGAACACATATCAACAATATTTAGCAGCAAAAGAGCTAAAGAAGCAGTCTTGGAGATATCACAGAAAGTATAACACCTGGTTTCAGCGGCATGAAGAGCCCAAAGTTGCGACAGATGAATATGAGCAGGGGACATATGTCTACTTTGATTTCCACATTGCAAACGATGACCTACAACATGGGTGGTGTCAAAGAATCAAGACCGAGTTCACTTTTGAGTATAATTACCTTGAAGATGAGCTTATTGTATA	2657	0.4358	MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPKTDPKEKAKSETRDWLNNVVGELESQIDSFEAEVEGLTVKKGKTRPPRLTHLETSITRHKAHIKKCELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSDVDELYSSLPLDKVESLEDLVTIKGTAVSVKTTLPASASQTSGASVQEQADDITSQDSNSDIVARTPPSKSSGISSAASTPVANDPTPVLNVLAHNPSGAPTPVSVLPGSSSVRTAVENATTASNSLSSVIQSTSTKEEEINSFPGRRLSPSLSDAGLMRGIGRNSLSNQATSSIPLGPANMISSNGSLGSVPSASEITKRNILGADDRLGSTGMVQPLVSPMSNRMILPQAVKANDVAGSVDSGNVNEAAAVSGRVFSPSVVPGMQWRPGSPFQNQNEAGQLRGRTEIAPDQREKFLQKFQQVQQQGHSTLLGMPSLGGGNHKQFSAQQQNSLLQQFNSQGSTISSQSGLGLGVQATGLSGISSPSLQQPPNSIHSASSQQPLMSSVSKDGDIGSSKVEEQQQQQNLPDDSATESTASTGLGKNLINEDDLKSPYAVDSPAGVSGSLPEPVQASIDTDLSPGQPLQSSQPSGNLGVIGRRSAADLGAIGDNFSGSSVNSGGVRDQSYYLKMLDAAYYKLPQPKDSERPRIYTPRHPTATPPSYPQVQAPIVNNPAFWERVGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV	885

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva04g01958	885	MobiDBLite	consensus disorder prediction	345	373	-	-
	Bva04g01958	885	MobiDBLite	consensus disorder prediction	257	310	-	-
	Bva04g01958	885	Coils	Coil	41	61	-	-
	Bva04g01958	885	MobiDBLite	consensus disorder prediction	257	320	-	-
	Bva04g01958	885	MobiDBLite	consensus disorder prediction	586	648	-	-
	Bva04g01958	885	MobiDBLite	consensus disorder prediction	586	702	-	-
	Bva04g01958	885	Pfam	NOT2 / NOT3 / NOT5 family	741	879	IPR007282	GO:0006355
	Bva04g01958	885	MobiDBLite	consensus disorder prediction	675	700	-	-
	Bva04g01958	885	PANTHER	BNAA10G16600D PROTEIN	1	885	-	-
	Bva04g01958	885	PANTHER	CCR4 NOT-RELATED	1	885	IPR040168	GO:0030015
	Bva04g01958	885	Coils	Coil	139	159	-	-
	Bva04g01958	885	Gene3D	-	726	880	IPR038635	-
	Bva04g01958	885	MobiDBLite	consensus disorder prediction	110	131	-	-
	Bva04g01958	885	PIRSF	NOT_su_3_5	1	885	IPR012270	GO:0006355\|GO:0030015
	Bva04g01958	885	Pfam	Not1 N-terminal domain, CCR4-Not complex component	4	236	IPR007207	GO:0005634\|GO:0006355
	Bva04g01958	885	MobiDBLite	consensus disorder prediction	345	364	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva04g01958	Bva-Chr4	19702874	19711730	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva04g01958	K12580		-	gmx:100785965	1385.93

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva04g01958	04	19702874	19711730	Bva03g00173	03	1074511	1083756	BWGD
	Bva04g01958	04	19702874	19711730	Bva04g01958	04	19702874	19711730	ECH