Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01920 ATGGGGGCCAAACCAAAGAACGATAAGGAATCCAAATCAAAATGCTGCAACCCTGTTAAGAAACCAGGGCCTGTGACAATGGATCATGTCCTCCTGGCATCACAGGAGACCAAGGAAGCTAGGGAACTCAGGATTCGAAGTCTTTTCAGTTTCTTTGATACGTCAAATGCTGGCTATTTAGATTTTACCCAGATTGAGACTGGTCTCTCAGCGCTTCAAATACCATCTGAATATAAGTATGCCAAGGATTTGTTAAATGCTTGTGATGCCAATAAGGATGGGCGAGTTGATTATCAAGAGTTCAAACGTTACATGGATGACAAAGAGCTGGAGCTTTACCGCATATTTCAAGCCATTGATGTTGAACATAATGGATGTATTTTGCCAGAGGAGCTCTGGGAGGCGCTTGTAAGGGCAGGGATTCAAATTGAAGATGAGGAACTTGCCCGTTTTGTTGAACGTGTTGATAAGGATAACAATGGGGTTATAACATTTGAAGAATGGAGGGATTTTCTGCTGCTTTACCCTCACGAGGCAACTATTGAGAACATTTATCATTACTTGGAGAGGATATGTCTGGTTGATATTGGGGAACAGGCTATTATCCCAGCAGGCATCAATAAGCACATCCATGCAAGCAGGTATCTGATTGCAGGAGGAGTAGCAGGGGCAGCATCACGAACAGCAACTGCACCGCTTGATCGTTTAAAGGTGGTATTGCAAGTCCAAACAACACGGGCTCGTTTTATGCCTGCAGTTAAAGATATATGGAGAGAAAGCGGTATCTTGGGATTCTTTCGAGGGAATGGCTTAAATGTCCTTAAGGTTGCCCCAGAAAGTGCCATTAGATTTTATACTTATGAGATGCTAAAGACCTTCCTTTTGAATGCTAAAGGAGGAGGGCCAAAAGATGATATTGGCCCTACAGGGCGCCTACTAGCTGGTGGTATAGCAGGTGCTATAGCTCAAACTGCTATCTATCCTATGGATCTTGTTAAAACACGTATACAAACGTATACTTGCAAAAGCGGAAGAGTTCCTAGCCTTGTAACCCTCTCAAAAGATATATGGGCTCGGGAAGGACCACGGGCATTTTACAGGGGCTTGGTTCCATCTATTATAGGGATTATTCCTTATGCTGGAATTGATCTCGCTGCATATGAAACCTTAAAAGACATGTCCAAGAAGTACATTCTACATGATGGAGAACCTGGTCCTCTTGTACAACTGGGCTGTGGGACAGTGTCAGGAACTCTTGGAGCAACATGTGTCTACCCATTTCAGGTCGTCAGAACAAGAATGCAGGCTCAGCGCACTAATACTGGTGCTTCTTACAAGGGAATGGGTGATGTATTTAGGAGAACCTTTGAACGCGAAGGATTTAGGGGATTCTACAAGGGACTATTTCCGAACCTGCTCAAAGTTGTTCCCTCTGCAAACGTCGAGGATGCTTTTGCAGTGAGGTCATTAAAGGCAGGAATAAAGTCCATAACTGAGTG 1499 0.4396 MGAKPKNDKESKSKCCNPVKKPGPVTMDHVLLASQETKEARELRIRSLFSFFDTSNAGYLDFTQIETGLSALQIPSEYKYAKDLLNACDANKDGRVDYQEFKRYMDDKELELYRIFQAIDVEHNGCILPEELWEALVRAGIQIEDEELARFVERVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICLVDIGEQAIIPAGINKHIHASRYLIAGGVAGAASRTATAPLDRLKVVLQVQTTRARFMPAVKDIWRESGILGFFRGNGLNVLKVAPESAIRFYTYEMLKTFLLNAKGGGPKDDIGPTGRLLAGGIAGAIAQTAIYPMDLVKTRIQTYTCKSGRVPSLVTLSKDIWAREGPRAFYRGLVPSIIGIIPYAGIDLAAYETLKDMSKKYILHDGEPGPLVQLGCGTVSGTLGATCVYPFQVVRTRMQAQRTNTGASYKGMGDVFRRTFEREGFRGFYKGLFPNLLKVVPSANVEDAFAVRSLKAGIKSITE 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01920 499 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 54 481 - -
Bva04g01920 499 ProSitePatterns EF-hand calcium-binding domain. 89 101 IPR018247 -
Bva04g01920 499 ProSiteProfiles Solute carrier (Solcar) repeat profile. 306 393 IPR018108 -
Bva04g01920 499 Pfam EF hand 82 103 IPR002048 GO:0005509
Bva04g01920 499 PANTHER SOLUTE CARRIER FAMILY 25 54 481 - -
Bva04g01920 499 PRINTS Mitochondrial carrier protein signature 366 384 IPR002067 GO:0055085
Bva04g01920 499 PRINTS Mitochondrial carrier protein signature 215 228 IPR002067 GO:0055085
Bva04g01920 499 PRINTS Mitochondrial carrier protein signature 228 242 IPR002067 GO:0055085
Bva04g01920 499 PRINTS Mitochondrial carrier protein signature 413 435 IPR002067 GO:0055085
Bva04g01920 499 PRINTS Mitochondrial carrier protein signature 321 339 IPR002067 GO:0055085
Bva04g01920 499 PRINTS Mitochondrial carrier protein signature 268 288 IPR002067 GO:0055085
Bva04g01920 499 ProSiteProfiles EF-hand calcium-binding domain profile. 143 178 IPR002048 GO:0005509
Bva04g01920 499 Pfam EF-hand domain pair 111 170 IPR002048 GO:0005509
Bva04g01920 499 SUPERFAMILY Mitochondrial carrier 208 478 IPR023395 -
Bva04g01920 499 ProSiteProfiles Solute carrier (Solcar) repeat profile. 404 492 IPR018108 -
Bva04g01920 499 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Bva04g01920 499 ProSitePatterns EF-hand calcium-binding domain. 156 168 IPR018247 -
Bva04g01920 499 Gene3D Mitochondrial carrier domain 205 492 IPR023395 -
Bva04g01920 499 Pfam Mitochondrial carrier protein 405 480 IPR018108 -
Bva04g01920 499 Pfam Mitochondrial carrier protein 305 396 IPR018108 -
Bva04g01920 499 Pfam Mitochondrial carrier protein 209 296 IPR018108 -
Bva04g01920 499 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 293 IPR018108 -
Bva04g01920 499 SUPERFAMILY EF-hand 38 209 IPR011992 -
Bva04g01920 499 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Bva04g01920 499 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Bva04g01920 499 CDD EFh 111 172 IPR002048 GO:0005509
Bva04g01920 499 SMART efh_1 44 72 IPR002048 GO:0005509
Bva04g01920 499 SMART efh_1 111 139 IPR002048 GO:0005509
Bva04g01920 499 SMART efh_1 147 175 IPR002048 GO:0005509
Bva04g01920 499 SMART efh_1 80 108 IPR002048 GO:0005509
Bva04g01920 499 Gene3D - 27 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01920 Bva-Chr4 19501788 19505185 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01920 301 491 EF-hand Containing Proteins AT5G51050 32.812 5.42e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01920 K14684 - tcc:18601151 805.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01920 04 19501788 19505185 Bva03g00210 03 1288993 1292567 BWGD
Bva04g01920 04 19501788 19505185 Bva04g01920 04 19501788 19505185 ECH
Bva03g00210 03 1288993 1292567 Bva04g01920 04 19501788 19505185 ECH