Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00210 ATGCTAACTTCCGTGGAAATGGTGGTCAAAGCGAAGGACGATAAGGAATCGAGATCAAAATGCTGCAATGATGTTAAGAAACCAGGGCCTGTGACAATGGATCATGTCCTCCTAGCATCACAggagaccaaggaagatagGGAACTCAGGATTCatagtctttttattttctttgataaggCAAATGCTGGCTATTTAGATGTTGCCCAGATTGAGGCTGGTCTCTCAGCGCTTCAAATACCATCTGAATATAAGTTTGCCAAGGATTTGTTAAATGCTTGTGATGCCAATAAGGATGGGCGAGTTGATTACCAAGAGTTCAAAAGGTACATGGATGACAAAGAGCTGGAGCTTTACCGCATATTTCAAGCCATTGATGTTGAACATAATGGATGTATTCTGCCAGAGGAGCTCTGGGAGGCACTTGTAAGGGCAGGTATTCATATTGATGATGAGGAACTCGCCCGTTTTGTTGAACGTGTTGATAAGGACAACAATGGGGTTATAACGTTTGAAGAATGGAGGGATTTTCTGCTTCTTTACCCTCATGAGGCAACTATCGAGAACATTTATCATTACTTGGAGAGAATATGTCTGGTTGATATAGGGGAACAGACTGTTATCCCAGCAGGCATCAGTAAGCACATCCATGCAAGCAGGTATCTGATTGCAGGAGGAGTAGCGGGAGCAGCATCACGAACAACAACTGCACCCCTTGATCGTTTAAAGGTGGTATTGCAAGTCCAAACAACACGGGCTCGTATTATGCCTGCGGTGAAAAATATATGGAGAGAAGGCGGTATTTTGGGATTTTTTCGTGGCAATGGCTTAAATGTCCTTAAGGTGGCCCCAGAGAGTGCTATTAGATTTTATACCTATGAGAAGCTAAAGACCTTCATCGTGAATGCTAAAGAAGAAGGGGCCAAGGGTGATATTGGCACTAGAGGGCGTCTACTTGCTGGTGGTATAGCTGGTGCTATAGCTCAAACTGCTATCTATCCTATGGATCTTGTTAAAACACGAATACAAACCTATGCTTGCAAAAGCGGAAGAGTTCCTAGTCTTGTAACCCTCTCAAAAGATATATGGGTTCAAGAAGGACCAAGAGCTTTTTATAGGGGCTTGATTCCATCTCTTCTTGGGATTATTCCTTATGCTGGAATTGATCTTGCTGCATACGAAACATTCAAAGACATGTCCAAGAAGTATATTCTACATGATGGAGAACCTGGTCCTCTTGTACAACTGGGCTGTGGGACACTGTCAGGAGCTCTTGGAGCAACATGCGTTTACCCATTTCAGGTCGTTAGAACAAGAATGCAGGCTCAGCGTTCCAGTACTAGTGCTTCTTACACGGGAATGGGAATGGGTGATGTATTCAGGAGAACCTTTGAACGTGAAGGGTTTAGGGGATTCTACAAAGGAATATTTCCTAACCTGCTCAAAGTAGTTCCCTCTGCAAGTATCACGTACGTAGTTTATGAGCGCATGAAAAAGGGTTTGGATTTGGACTG 1514 0.4247 MLTSVEMVVKAKDDKESRSKCCNDVKKPGPVTMDHVLLASQETKEDRELRIHSLFIFFDKANAGYLDVAQIEAGLSALQIPSEYKFAKDLLNACDANKDGRVDYQEFKRYMDDKELELYRIFQAIDVEHNGCILPEELWEALVRAGIHIDDEELARFVERVDKDNNGVITFEEWRDFLLLYPHEATIENIYHYLERICLVDIGEQTVIPAGISKHIHASRYLIAGGVAGAASRTTTAPLDRLKVVLQVQTTRARIMPAVKNIWREGGILGFFRGNGLNVLKVAPESAIRFYTYEKLKTFIVNAKEEGAKGDIGTRGRLLAGGIAGAIAQTAIYPMDLVKTRIQTYACKSGRVPSLVTLSKDIWVQEGPRAFYRGLIPSLLGIIPYAGIDLAAYETFKDMSKKYILHDGEPGPLVQLGCGTLSGALGATCVYPFQVVRTRMQAQRSSTSASYTGMGMGDVFRRTFEREGFRGFYKGIFPNLLKVVPSASITYVVYERMKKGLDLD 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00210 504 PRINTS Mitochondrial carrier protein signature 274 294 IPR002067 GO:0055085
Bva03g00210 504 PRINTS Mitochondrial carrier protein signature 221 234 IPR002067 GO:0055085
Bva03g00210 504 PRINTS Mitochondrial carrier protein signature 372 390 IPR002067 GO:0055085
Bva03g00210 504 PRINTS Mitochondrial carrier protein signature 419 441 IPR002067 GO:0055085
Bva03g00210 504 PRINTS Mitochondrial carrier protein signature 327 345 IPR002067 GO:0055085
Bva03g00210 504 PRINTS Mitochondrial carrier protein signature 234 248 IPR002067 GO:0055085
Bva03g00210 504 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Bva03g00210 504 ProSiteProfiles EF-hand calcium-binding domain profile. 118 148 IPR002048 GO:0005509
Bva03g00210 504 Pfam EF hand 88 109 IPR002048 GO:0005509
Bva03g00210 504 SMART efh_1 117 145 IPR002048 GO:0005509
Bva03g00210 504 SMART efh_1 153 181 IPR002048 GO:0005509
Bva03g00210 504 SMART efh_1 50 78 IPR002048 GO:0005509
Bva03g00210 504 SMART efh_1 86 114 IPR002048 GO:0005509
Bva03g00210 504 Gene3D Mitochondrial carrier domain 212 501 IPR023395 -
Bva03g00210 504 SUPERFAMILY Mitochondrial carrier 215 496 IPR023395 -
Bva03g00210 504 PANTHER SOLUTE CARRIER FAMILY 25 59 502 - -
Bva03g00210 504 ProSitePatterns EF-hand calcium-binding domain. 162 174 IPR018247 -
Bva03g00210 504 ProSiteProfiles Solute carrier (Solcar) repeat profile. 410 500 IPR018108 -
Bva03g00210 504 ProSiteProfiles EF-hand calcium-binding domain profile. 149 184 IPR002048 GO:0005509
Bva03g00210 504 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 59 502 - -
Bva03g00210 504 Pfam Mitochondrial carrier protein 313 402 IPR018108 -
Bva03g00210 504 Pfam Mitochondrial carrier protein 411 501 IPR018108 -
Bva03g00210 504 Pfam Mitochondrial carrier protein 215 302 IPR018108 -
Bva03g00210 504 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 299 IPR018108 -
Bva03g00210 504 SUPERFAMILY EF-hand 42 216 IPR011992 -
Bva03g00210 504 ProSiteProfiles Solute carrier (Solcar) repeat profile. 312 399 IPR018108 -
Bva03g00210 504 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Bva03g00210 504 Gene3D - 33 194 - -
Bva03g00210 504 Pfam EF-hand domain pair 117 176 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00210 Bva-Chr3 1288993 1292567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00210 3 504 EF-hand Containing Proteins AT5G51050 71.571 0.0 744
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00210 K14684 - nnu:104591896 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01920 04 19501788 19505185 Bva03g00210 03 1288993 1292567 BWGD
Bva03g00210 03 1288993 1292567 Bva03g00210 03 1288993 1292567 ECH
Bva03g00210 03 1288993 1292567 Bva04g01920 04 19501788 19505185 ECH