Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01888 ATGGTAGAGGGCAAAGACTCGTTCATGCTCGACCCCAAATCTTCAGGCATTGCTACCTCAACAACCATAATAAAACAGAGACCTTGCTTTATGGCTCTGGCCCTCCTCAGAACCTCAGCCATTCTTCTCACAGCAGCTTCAATTGCAGTGACAGTCACCAACTCCCAAACCGTTATCATCTTCTCGATTCAGTTCGAAGCCCATTATTACTACTCATCTGCTTTCAAATTCTTGGTTGCAGCAGATGCTATAGTCTGTGTCTTCTCTGTTCTGACACTCTTTATCGTTCACCTTCTTCTGAGGCACAGAGGATCCCAACTCAGAGGCTACTATTTCTACATATTTTTGCACGATACAGCGATGACGGTGTTATTGACATCAGGATGCGCAGCGACGACTGCGATCGGGTATGTGGGTCAGTACGGAGAAGAACACATGGGCTGGGCGGCGATGTGCGATCGCGTGCGGAAATTCTGCGGCAGAAGCTTGGTTTCCCTTTTGCTGTCTTATTTAGCATTGTTTGCCTATTTGGGGCTCACCGTCGGCACCGTCCATAAGCTCAGGACTCCTCCCAAGCAGTA 581 0.4854 MVEGKDSFMLDPKSSGIATSTTIIKQRPCFMALALLRTSAILLTAASIAVTVTNSQTVIIFSIQFEAHYYYSSAFKFLVAADAIVCVFSVLTLFIVHLLLRHRGSQLRGYYFYIFLHDTAMTVLLTSGCAATTAIGYVGQYGEEHMGWAAMCDRVRKFCGRSLVSLLLSYLALFAYLGLTVGTVHKLRTPPKQ 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01888 193 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 5 189 - -
Bva04g01888 193 Pfam Casparian strip membrane protein domain 28 174 IPR006702 -
Bva04g01888 193 PANTHER CASP-LIKE PROTEIN 1F2 5 189 - -
Bva04g01888 193 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 36 186 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01888 Bva-Chr4 19305063 19305862 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01888 - - jre:109001865 187.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01888 04 19305063 19305862 Bva04g01888 04 19305063 19305862 ECH
Bva03g00250 03 1521622 1522857 Bva04g01888 04 19305063 19305862 ECH