Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00250 ATGGCAGACGGCAAAGATTCCTTCATGCTCGACGCCAAATCTTCGGTCACCGCTACCTCGACCACGAAACGAAGACCTTGTTTCGTGGCCCTCGCCCTTCTCCGAATCTCAGCTATTCTCCTCACCGCCGCTTCAATTGCAGTCACAGTCACCAACACCCAAACCGTTACCGTCTTCTCGATTCAGTTCGAAGCCCATTATTACTACTCATCTGCCTTCAAATTCTTGGTCGCCGCCGATGCTATAGTCTGTGCCTTCTCTGTTCTGACACTTGTCATCGTTCACCTTCTGAGGCACAAAGCATCCCAACGCAGAGAATACTGTTTCTACTTATTTCTGCATGATACTGCGATGATGGTGTTATTGATATCTGGGTGCGCAGCTGCTACTGCTATCGGGTACGTGAGCCAATACGGACAGGATCATATGGGTTGGGCGGCGATATGTGACCATGTGCACAAATTCTGCAGCAGAGGCTTGGTGGCTCTTTCGCTGTCATATTTAGCCTTCTTTGCCTATTTGGGACTCACCATTCAGACTGCCTATAAGCTCATGTCATCTTCTCCCAATCAATA 575 0.4904 MADGKDSFMLDAKSSVTATSTTKRRPCFVALALLRISAILLTAASIAVTVTNTQTVTVFSIQFEAHYYYSSAFKFLVAADAIVCAFSVLTLVIVHLLRHKASQRREYCFYLFLHDTAMMVLLISGCAAATAIGYVSQYGQDHMGWAAICDHVHKFCSRGLVALSLSYLAFFAYLGLTIQTAYKLMSSSPNQ 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00250 191 PANTHER CASP-LIKE PROTEIN 1F2 5 188 - -
Bva03g00250 191 PANTHER NITRATE, FORMATE, IRON DEHYDROGENASE 5 188 - -
Bva03g00250 191 Pfam Casparian strip membrane protein domain 26 172 IPR006702 -
Bva03g00250 191 TIGRFAM A_tha_TIGR01569: plant integral membrane protein TIGR01569 34 183 IPR006459 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00250 Bva-Chr3 1521622 1522857 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00250 - - gmx:102659722 194.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva03g00250 03 1521622 1522857 Bva03g00250 03 1521622 1522857 ECH
Bva03g00250 03 1521622 1522857 Bva04g01888 04 19305063 19305862 ECH