Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01837 ATGTCTGTGAACAATAATAACCCGCCTAAGAGCCTTGGGGCCTCTTCGTCATCCTTTGGTAATGCTGGAACGGTCTCCCCCTCTGTACCTGGAAACCCTGGGTATTCACAGTCGCCAGCTCAAGCACAGATTGCAGCTGGTTTTCAAGGTCAGTTTCAGCTGTCCCAAGCCCATGCCATTGCGCAAGCGCAGTCAAAGGCACAGCTTCACGCCCAAGTTCAAGCACAAGCAGCTCACGCCCAATTCCAGGCTCAGCTACAAGCTCAAGGGTTATCTCTAAATCAGAACCAATCGGGTGGCTTGGGTAACTTGGGGGTGTCCTCACCCTCATTTTCTACACCTGGCAGTGCAAGTGCAAAGCGTCTCCCTCTTAAGCCACCTATTCGGCCTCTTGGTTTTTCCCCTTCAACTACCATCTCTCCTTTAAAACCAATGGAACTTACACCTGCTGCCCGGAGAAAGAAGCAGAAGCTTCCTGAGAAGCAGCTTCAAGAAAAAGTGGCTGCTATTCTACCAGAGTCTGCTTTATACACGCAGCTTCTTGAGTTTGAGTCCCGAGTTGATGCTGCACTCACTAGAAAGAAGGTTGACATCCAAGAAGCCCTCAAAAATCCCCCATGTAATCAGAAAACTCTTCGCATCTACGTTTTTAACACCTTTGCTAATCAAATTCGCACAATTCCTACAAAGCCAAATGCTGAACCACCTACATGGACTCTTAAGATTGTTGGTAGAATATTGGAAGACGGGATAGATCCTGATCAGCCAGGAGTAGTTCAAAAGTCAAATCCTTTATATCCAAAGTTCTCAGCTTTCTTCAGGAGAGTAACCATTTCGTTGGACCAGAGACTTTATCCTGATAATCACATTATTATGTGGGAGAATGCTCGATCTCCTGCCCCTCATGAGGGTTTTGAAGTGAAGAGAAAAGGGGACAAAGAATTTACAGTTCATATACGGTTGGAAATGAATTATGTACCTGAGAAATTCAAGCTTTCACCAGCTCTGACAGAAGTTCTTGGCATTGAGGTTGATACCCGCCCAAGAATTATTGCTGCAATCTGGCATTATGTGAAGGCCAGGAAATTACAAAACCCAAATGACCCCTCTTACTTCCACTGTGATATCCCACTTCAGAAAGTATTTGGGGAAGAAAAGATGAAGTTTACCATGGTTTCACAGAAGATATCACAGCATTTGTTCCCTCCTCAGCCTATACTTTTGGAGCATAAGATCAAGCTTTCTGGGAATAGTCCAGCTGGAACTGCTTGTTATGATGTGCTGGTGGATGTCCCTTTTCCTATACAGAGGGAGTTGTCGGCATTATTGGCCAACGTGGAGAAGAACAAAGAGATTGAGACCTGTGATGAAGCAATATGTGCACTTATTAGAAAAATCCATGAGCACCGGAGAAGACGGGCATTCTTTCTGGGGTTCAGTCAATCCCCAGTGGAATTTATTGATGCCTTGATTGAATCTCAAAGCAGGGATCTGAAAATTGTGTCTGGAGAACCTAGTCGCAATGTTGAAAAAGAGCGTCGATCAGATTTCTTCAATCAACCATGGGTTGAGGATGCTGTTATACGTTATTTGAATCGCAAACCAGCTGCAGGGGGTGATGCTCCAGGAAGCACATG 1637 0.452 MSVNNNNPPKSLGASSSSFGNAGTVSPSVPGNPGYSQSPAQAQIAAGFQGQFQLSQAHAIAQAQSKAQLHAQVQAQAAHAQFQAQLQAQGLSLNQNQSGGLGNLGVSSPSFSTPGSASAKRLPLKPPIRPLGFSPSTTISPLKPMELTPAARRKKQKLPEKQLQEKVAAILPESALYTQLLEFESRVDAALTRKKVDIQEALKNPPCNQKTLRIYVFNTFANQIRTIPTKPNAEPPTWTLKIVGRILEDGIDPDQPGVVQKSNPLYPKFSAFFRRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVHIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSYFHCDIPLQKVFGEEKMKFTMVSQKISQHLFPPQPILLEHKIKLSGNSPAGTACYDVLVDVPFPIQRELSALLANVEKNKEIETCDEAICALIRKIHEHRRRRAFFLGFSQSPVEFIDALIESQSRDLKIVSGEPSRNVEKERRSDFFNQPWVEDAVIRYLNRKPAAGGDAPGST 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01837 545 CDD SWIB_like 332 400 - -
Bva04g01837 545 SMART swib_2 326 405 IPR019835 -
Bva04g01837 545 MobiDBLite consensus disorder prediction 1 42 - -
Bva04g01837 545 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 94 537 - -
Bva04g01837 545 ProSiteProfiles SWIB/MDM2 domain profile. 325 402 IPR003121 -
Bva04g01837 545 SUPERFAMILY SWIB/MDM2 domain 320 410 IPR036885 -
Bva04g01837 545 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 94 537 - -
Bva04g01837 545 Gene3D SWIB/MDM2 domain 322 406 IPR036885 -
Bva04g01837 545 MobiDBLite consensus disorder prediction 104 160 - -
Bva04g01837 545 Pfam SWIB/MDM2 domain 329 400 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01837 Bva-Chr4 19061407 19064506 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Bva04g01837 SWIB 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01837 K11650 - gmx:100776562 900.968
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01837 04 19061407 19064506 Bva03g00300 03 1798102 1801334 BWGD
Bva04g01837 04 19061407 19064506 Bva04g01837 04 19061407 19064506 ECH
Bva03g00300 03 1798102 1801334 Bva04g01837 04 19061407 19064506 ECH