Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00300 ATGTCTGGGAACAATAATAACCCGCCTAAAAGCCTTGGGGCATCTTCGTCATCCTTTGCTAATGCTGGAATGGCCTCCCCGTCTATGCCTGGAAACCCTGGATATTCACAGACGCCAGCTCAAGCACAGATTGCGGCTGGTTTTCAAGGTCAATTTCAGCTGTCCCAAGCACATGCCATCGCACAAGCGCAGTCAAAGGCTCATCTTCACGCCCAAGTTCAAGCACACGCTGCTCATGCCCAACTCCAGGCTCAGTTACAAGCTCAAGGGTTATCTCTTAATCAGCACCAGTCAGGTGGCTTGGGGAACTTGGGGGCGTCCTCACCCTCATTTTCAACACCTGGCAGTGCAAGCGCAAAGCGTCTCCCTCTAAAACCCCCTATTCGTCCTCTTGGTTTTTCCCCTTCAAACACCATCTCTCCTTTAAGACCTATGGAACTTAACCCTGCTGCTCGGAGGAAGAAGCAGAAACTCCCAGAGAAGCAGCTTCAAGAAAAAGTGGCTGCTATTTTGCCGGAATCTGCTCTATACACCCATCTTCTTGAGTTTGAGTCCCGAGTTGATGCTGCACTTACTAGAAAGAAGATTGACATCCAAGAAGCCCTAAAAAATCCTCCATGTATTCAGAAAACACTTCGCATCTACGTTTTCAACACATTTGCTAATCAAATTCGCACAATTCCTATGAAGCCAAATGCTGAACCTCCTACATGGACCCTTAAGATAGTTGGTAGAATATTGGAAGATGGGATAGATCCTGATCAGCCAGGAGTAGTTCAAAAGTCAAATCCTTTCTATCCGAAGTTCTCAGCTTTCTTCCGGAGAGTAACCATTTCTTTGGATCAGAGACTCTATCCTGATAATCACATTATTATGTGGGAGAATGCTCGATCTCCTGCACCTCATGAGGGTTTTGAAGTGAAGAGAAAAGGGGATAAAGAATTTACTGTTAACATACGGTTGGAAATGAATTACGTACCTGAGAAATTCAAGCTTTCACCAGCTTTGACAGAAGTTCTTGGCATTGAGGTTGATACCCGCCCGAGAATTATTGCTGCTATCTGGCATTATGTGAAGGCCAGGAAATTACAAAACCCAAATGACCCCTCTTACTTCTACTGTGATCCCCCTCTTCAGAAAGTATTTGGGGTAGAAAAGATGAAGTTTACCATGGTTACTCAGAAGATATCACAGCATTTGTTCCCTCCTCAGCCTATACTTTTGGAGCATAAGATCAAGCTTTCTGGGAATAGTCCAGCAGGAACTGCTTGTTATGATGTGATGGTGGATGTCCCTTTTCCTATACAGAGGGAGCTGTCTGCATTACTGGCCAACGTGGAGAAGAACAAAGAGATTGAGACATGTGATGAAGCAATATGTgcaattattagaaaaatccATGAGCACCGTAGAAGACGGGCATTCTTTCTGGGATTCAGTCAATCCCCAGTGGAATTTATTAATGCAATGATTGAATCTCAAAGCAAGGATCTGAAACTTGTGGCTGGAGAACCTAGTCGCAATGCTGAAAAAGAGCGTCGATCAGATTTCTTCAACCAACCATGGGTTGAAGATGCTGTTATACGTTATTTGAATCGCAAACCAACTGCAGGGGGTGATGCTCCAGGAAGCATATG 1637 0.4441 MSGNNNNPPKSLGASSSSFANAGMASPSMPGNPGYSQTPAQAQIAAGFQGQFQLSQAHAIAQAQSKAHLHAQVQAHAAHAQLQAQLQAQGLSLNQHQSGGLGNLGASSPSFSTPGSASAKRLPLKPPIRPLGFSPSNTISPLRPMELNPAARRKKQKLPEKQLQEKVAAILPESALYTHLLEFESRVDAALTRKKIDIQEALKNPPCIQKTLRIYVFNTFANQIRTIPMKPNAEPPTWTLKIVGRILEDGIDPDQPGVVQKSNPFYPKFSAFFRRVTISLDQRLYPDNHIIMWENARSPAPHEGFEVKRKGDKEFTVNIRLEMNYVPEKFKLSPALTEVLGIEVDTRPRIIAAIWHYVKARKLQNPNDPSYFYCDPPLQKVFGVEKMKFTMVTQKISQHLFPPQPILLEHKIKLSGNSPAGTACYDVMVDVPFPIQRELSALLANVEKNKEIETCDEAICAIIRKIHEHRRRRAFFLGFSQSPVEFINAMIESQSKDLKLVAGEPSRNAEKERRSDFFNQPWVEDAVIRYLNRKPTAGGDAPGSI 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00300 545 CDD SWIB_like 332 400 - -
Bva03g00300 545 PANTHER SWIB/MDM2 DOMAIN-CONTAINING PROTEIN-RELATED 94 536 - -
Bva03g00300 545 Gene3D SWIB/MDM2 domain 322 406 IPR036885 -
Bva03g00300 545 MobiDBLite consensus disorder prediction 99 117 - -
Bva03g00300 545 SMART swib_2 326 405 IPR019835 -
Bva03g00300 545 MobiDBLite consensus disorder prediction 1 42 - -
Bva03g00300 545 MobiDBLite consensus disorder prediction 99 144 - -
Bva03g00300 545 Pfam SWIB/MDM2 domain 329 400 IPR003121 -
Bva03g00300 545 SUPERFAMILY SWIB/MDM2 domain 320 410 IPR036885 -
Bva03g00300 545 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 94 536 - -
Bva03g00300 545 ProSiteProfiles SWIB/MDM2 domain profile. 325 402 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00300 Bva-Chr3 1798102 1801334 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Bva03g00300 SWIB 1.8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00300 K11650 - gmx:100776562 912.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01837 04 19061407 19064506 Bva03g00300 03 1798102 1801334 BWGD
Bva03g00300 03 1798102 1801334 Bva03g00300 03 1798102 1801334 ECH
Bva03g00300 03 1798102 1801334 Bva04g01837 04 19061407 19064506 ECH