Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01827 ATGATTGAGAAATTGAGACAATACGAGCGTGTGTTTAACCACTTTGATGTGAACAACGATGGGAGGATATCATCATCGGAGCTACGGCAGTGCGCGAAGGCGATAGGCAGAGAGTTGTCGGAGGAGGAAGCAGAGGTGGCGGTGGAATGTTTAGACGCAGACGGAGATGGGTTGGTGGGATTGGATGATTTTGTTCGGTTTGTAGAGGGaggagaagaggaagagagagtgAATGACCTAAAAGAGGCTTTTAGAATGTATGAGATGGATGGGTGTGGGTGTATCACACCCAAGAGTCTTAAGAGGATGCTTAGTAAATTAGTGAAGGTTCTAATCAGAAGAATTCTCTCCTCCATACGAGCTCTTGCCGTATTGGTTTTATCTGTGAGCCAAACACTTCCTTCCCCTTCTGATCATTGGGTCTGCTTAAAGGGGTCTGACCAGATAGAACTTCAAGCAAAACGACAACGTAAGCATAGTTATCAACACAGGAGGGAGCCAAATAACCCATCAAGACAGATCCTCAAGCTCTGGCTCCAAGTGAGGAAACAGTA 554 0.4404 MIEKLRQYERVFNHFDVNNDGRISSSELRQCAKAIGRELSEEEAEVAVECLDADGDGLVGLDDFVRFVEGGEEEERVNDLKEAFRMYEMDGCGCITPKSLKRMLSKLVKVLIRRILSSIRALAVLVLSVSQTLPSPSDHWVCLKGSDQIELQAKRQRKHSYQHRREPNNPSRQILKLWLQVRKQ 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01827 184 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Bva04g01827 184 Gene3D - 70 111 - -
Bva04g01827 184 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Bva04g01827 184 Gene3D - 2 69 - -
Bva04g01827 184 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 109 - -
Bva04g01827 184 SUPERFAMILY EF-hand 5 107 IPR011992 -
Bva04g01827 184 Pfam EF-hand domain pair 8 68 IPR002048 GO:0005509
Bva04g01827 184 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Bva04g01827 184 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Bva04g01827 184 CDD EFh 7 68 IPR002048 GO:0005509
Bva04g01827 184 SMART efh_1 79 107 IPR002048 GO:0005509
Bva04g01827 184 SMART efh_1 7 35 IPR002048 GO:0005509
Bva04g01827 184 SMART efh_1 43 71 IPR002048 GO:0005509
Bva04g01827 184 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Bva04g01827 184 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01827 Bva-Chr4 19008478 19009710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01827 3 107 EF-hand Containing Proteins AT1G76640 49.074 1.52e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01827 K13448 - pvy:116140791 145.976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01827 04 19008478 19009710 Bva03g00313 03 1866971 1867396 BWGD
Bva04g01827 04 19008478 19009710 Bva04g01827 04 19008478 19009710 ECH
Bva03g00313 03 1866971 1867396 Bva04g01827 04 19008478 19009710 ECH