Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00313 atggCTGATAAGATGAGCCAGTATGAGCGTGTGTTTAACCACTTTGATGAGAACAAAGATGGGAAGATATCATCGTCGGAGCTACGACAATGCGTGAAGGCGATAGGCGAAGAGTTGTCGGAGGAGGAGGCGGAGGCGGCGGTGAAATGTTTAGACTCCGACGAAGATGGGTTGGTGGGGTTTGATGATTTTGTACGGTTTGTGGACGCaggagaagaggaagagaaagtgaaGGACCTAAAAGAGGCTTTTAGAATGTATGAGATGGATGGGTGTGGTTGTATTACACCAAAGAGTCTTAAGAGAATGCTTAGTAGATTAGGTGAGCGTAAAAGCATAGATGAGTGCCAAAATATGATCGCTAGATACGATCTCAATGGTGATGGGGTCATTAGTTTTGATGAATTTAGAGTTATGATGTTGTA 425 0.4118 MADKMSQYERVFNHFDENKDGKISSSELRQCVKAIGEELSEEEAEAAVKCLDSDEDGLVGFDDFVRFVDAGEEEEKVKDLKEAFRMYEMDGCGCITPKSLKRMLSRLGERKSIDECQNMIARYDLNGDGVISFDEFRVMML 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00313 141 ProSitePatterns EF-hand calcium-binding domain. 16 28 IPR018247 -
Bva03g00313 141 ProSiteProfiles EF-hand calcium-binding domain profile. 3 38 IPR002048 GO:0005509
Bva03g00313 141 ProSiteProfiles EF-hand calcium-binding domain profile. 39 74 IPR002048 GO:0005509
Bva03g00313 141 ProSiteProfiles EF-hand calcium-binding domain profile. 111 141 IPR002048 GO:0005509
Bva03g00313 141 ProSiteProfiles EF-hand calcium-binding domain profile. 75 110 IPR002048 GO:0005509
Bva03g00313 141 ProSitePatterns EF-hand calcium-binding domain. 124 136 IPR018247 -
Bva03g00313 141 Gene3D - 1 70 - -
Bva03g00313 141 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 3 141 - -
Bva03g00313 141 SMART efh_1 43 71 IPR002048 GO:0005509
Bva03g00313 141 SMART efh_1 79 107 IPR002048 GO:0005509
Bva03g00313 141 SMART efh_1 7 35 IPR002048 GO:0005509
Bva03g00313 141 SMART efh_1 115 141 IPR002048 GO:0005509
Bva03g00313 141 SUPERFAMILY EF-hand 5 141 IPR011992 -
Bva03g00313 141 Coils Coil 70 90 - -
Bva03g00313 141 CDD EFh 79 140 IPR002048 GO:0005509
Bva03g00313 141 Pfam EF-hand domain pair 7 68 IPR002048 GO:0005509
Bva03g00313 141 Pfam EF-hand domain pair 79 140 IPR002048 GO:0005509
Bva03g00313 141 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 3 141 - -
Bva03g00313 141 ProSitePatterns EF-hand calcium-binding domain. 52 64 IPR018247 -
Bva03g00313 141 Gene3D - 71 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00313 Bva-Chr3 1866971 1867396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00313 3 140 EF-hand Containing Proteins AT1G76650 50.000 9.98e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00313 K13448 - zju:107427847 219.164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01827 04 19008478 19009710 Bva03g00313 03 1866971 1867396 BWGD
Bva03g00313 03 1866971 1867396 Bva03g00313 03 1866971 1867396 ECH
Bva03g00313 03 1866971 1867396 Bva04g01827 04 19008478 19009710 ECH