Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g00849 ATGGGGAGCCCCGGATTGAGCAATCGCAATAATGGGCAACAGCGATTAGGCATTACAGAACCCATTTCTTTGGGTGGACCAACTGAGTATGATGTGAACAAGACCCGTGAGCTTGAGAAGTATCTGCAAGACGCTGGATTGTATGAGAGTCAAGAGGAGGCTGTGAGTAGGGAAGAAGTGCTTGGCAGGCTAGACCAGATTGTGAAGACTTGGATTAAATCCATTAGCCGTGCAAAGGGGCTGAATGAACAGCTGGTGCGAGAAGCAAATGCCAAGATTTTCACTTTTGGCTCCTATCGGCTGGGGGTGCATGGTCCTGGTGCAGATATAGACACTCTTTGCATGGGACCTAGACATGCAAGCAGAGATGAAGATTTCTTTGGTGAGCTAGGTAGGATGTTGTCTGAGATGCCAGAAGTAACAGAACTGCACCCTGTGCCTGATGCACATGTGCCAGTGATGAAATTCAAGTTCAATGGCATTTCCATTGATCTCCTTTATGGAAAATTGTCCTTGTGGGTTATTCCTGAAGACTTAGATATATCGCAGGAATCAATATTACAAAATGCGGATGAACAAACTGTCCGGAGTCTTAATGGTTGTAGAGTTACTGATCAAATCCTGCGTTTGGTTCCAAATATTCAGAATTTTCGCTCAACCTTGAGATGCATAAGGTTATGGGCAAAGCGTCGCGGTGTTTATTCAAATGTTGCAGGTTTTCTTGGTGGGATAAACTGGGCACTGCTTGTTGCTCGAATATGCCAGCTATATCCCAATGCACTTCCTAATATGTTAGTATCTCGATTCTTCAGGGTATATACTCAGTGGCGTTGGCCAAATCCAGTAATGCTTTGTGATATTGAAGAAGGATCTCTTGGATTTCCAGTTTGGGATCCTAGAAGAAACCCCAAGGACAGATATCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTATCTTCAAGTACTTTGCGGATTATGATGGAGGAATTTCAGAGGGGAAATGAAATTTGTGAGGCTATCGAAGCTAACAAGGCTGATTGGGATACTCTTTTTGAGCCTTACCCCTTTTTTGAAGCATATAAGAATTATCTACAGATAGACATTAGTGCAGAGAATGCTGATGATCTTAGAAACTGGAAAGGCTGGGTTGAGTCTCGCCTCCGCCAGCTGACATTGAAGATTGAAAGACACACTTTTGGCATGCTTCAGTGCCATCCGCATCCTGGTGATTTTCCAGACAAATCTAGACCTTTCCACTGCTGTTACTTCATGGGTCTACAACGTAAGCAAGGAGTTCCAGTAAATGAAGGTGAACAATTTGATATAAGGCTAACGGTTGAAGAATTCAAGCATTCTGTCAACTTGTACACCATGTGGATACCTGGCATGGAAATCCATGTATCGCATGTAAAACGTCGGAACATACCTAACTTTTTATTTCCTGGTGGTGTTCGACCTTCTCGCCCATCTAAAGTAACTTGGGAGAGTAAGCGGAGTTCGGAATTGAAGGTTTCTGGCCAGAGTCAAGTAGATAAGTCTCATGAAGTTAAAGCAATTGAAATAGATgatgaaaggaagagaaagcgGACAGATGATAACATAGAGAATAACTTGAAGAATTCCAAGTGCTTTGTCTCTTTACCTCCCTTCAGCAGGGAATTTCATGATGATGGAACTCCTGCTAGCACTGCTAGTTCGTGTTCTATGAAATATGCTGACACAGAAGCCAACAAAATAGGGGACCAAAAGAGTGAGAACCCTGAATCAAAATCTCCAAGGGAGATTTTTCAAAGTAGTGACACTGATAGATCAGTGAAATATAATACAGAAATCAACAGTATACCTGCAATTACTGATACATCAAATTCTAGAGAAGCAGAGAAGCTGGCTATAGAGAAGATTATTTCTGGTCCATATCATGTGCACCAAGCATTTCCTGAAGAATCCAACGAGCTTGAAGATGATTTCGAATACAAAAATCAAGTGAAAGATTATAAGAGGAATATGAATAGCAGCAGCTTGGATACTTCAAACTCAAAGTCTGTGGAGGGAGCAGAGCCTGTTGTTTCTAAGGAAGTCCCTTATTCAATATGCACGAATGGGGGCTTGGACGAGCTTGAGccTGCTGAACTCACAGCACCATTATGTGAGACTCCTGCACCTGTGCCACAGCGGAAGCCGCTGATCAGCTA 2216 0.4219 MGSPGLSNRNNGQQRLGITEPISLGGPTEYDVNKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKTWIKSISRAKGLNEQLVREANAKIFTFGSYRLGVHGPGADIDTLCMGPRHASRDEDFFGELGRMLSEMPEVTELHPVPDAHVPVMKFKFNGISIDLLYGKLSLWVIPEDLDISQESILQNADEQTVRSLNGCRVTDQILRLVPNIQNFRSTLRCIRLWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCDIEEGSLGFPVWDPRRNPKDRYHLMPIITPAYPCMNSSYNVSSSTLRIMMEEFQRGNEICEAIEANKADWDTLFEPYPFFEAYKNYLQIDISAENADDLRNWKGWVESRLRQLTLKIERHTFGMLQCHPHPGDFPDKSRPFHCCYFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNLYTMWIPGMEIHVSHVKRRNIPNFLFPGGVRPSRPSKVTWESKRSSELKVSGQSQVDKSHEVKAIEIDDERKRKRTDDNIENNLKNSKCFVSLPPFSREFHDDGTPASTASSCSMKYADTEANKIGDQKSENPESKSPREIFQSSDTDRSVKYNTEINSIPAITDTSNSREAEKLAIEKIISGPYHVHQAFPEESNELEDDFEYKNQVKDYKRNMNSSSLDTSNSKSVEGAEPVVSKEVPYSICTNGGLDELEPAELTAPLCETPAPVPQRKPLIS 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g00849 738 MobiDBLite consensus disorder prediction 584 608 - -
Bva04g00849 738 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Bva04g00849 738 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 680 - -
Bva04g00849 738 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Bva04g00849 738 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Bva04g00849 738 MobiDBLite consensus disorder prediction 516 541 - -
Bva04g00849 738 Pfam Nucleotidyltransferase domain 84 164 IPR002934 GO:0016779
Bva04g00849 738 MobiDBLite consensus disorder prediction 675 695 - -
Bva04g00849 738 Gene3D - 17 359 - -
Bva04g00849 738 MobiDBLite consensus disorder prediction 584 612 - -
Bva04g00849 738 MobiDBLite consensus disorder prediction 1 18 - -
Bva04g00849 738 Pfam Poly(A) polymerase predicted RNA binding domain 364 421 IPR007010 GO:0003723|GO:0043631
Bva04g00849 738 SUPERFAMILY Nucleotidyltransferase 13 209 IPR043519 -
Bva04g00849 738 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Bva04g00849 738 CDD NT_PAP_TUTase 57 211 - -
Bva04g00849 738 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Bva04g00849 738 MobiDBLite consensus disorder prediction 675 692 - -
Bva04g00849 738 PANTHER POLY A POLYMERASE 1 680 - -
Bva04g00849 738 MobiDBLite consensus disorder prediction 497 541 - -
Bva04g00849 738 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g00849 Bva-Chr4 5577340 5582894 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g00849 K14376 - gmx:100816915 1139.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00849 04 5577340 5582894 Bva03g00706 03 4225501 4231875 ECH
Bva04g00849 04 5577340 5582894 Bva04g00849 04 5577340 5582894 ECH