Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00706 ATGGGGAGCCCCGGATTGAGCAATCGCAATAATGGGCAACAGCGATTAGGCATTACGGAACCCATTTCTTTGGGTGGACCCACTGAGTACGATGTGAACAAGACCCGTGAGCTTGAGAAGTATCTGCAAGACGCTGGATTATATGAGAGTCAAGAAGAGGCTGTGAGTAGGGAAGAAGTGCTTGGCAGGCTAGACCAGATTGTGAAGACTTGGATTAAGTCTGTTAGCCGTGCAAAGGGACTGAATGAACAGCTGGTGCAAGAAGCAAATGCCAAGATTTTCACCTTTGGCTCCTATCGGCTGGGGgTGCATGGTCCTGGAGCAGATATAGACACTCTTTGTGTGGGACCTAGACATGCAAGCAGAGAAGAAGATTTCTTCGGTGAGCTAGGTAAGATGCTGTCTGAGATGCCAGAAGTATCAGAATTGCACCCTGTGCCCGATGCACATGTTCCGGTGATGAAATTCAAGTTCAATGGTGTTTCCATAGATCTCCTTTATGGAAAATTGTCTTTGTGGGTTATTCCTGAAGATTTAGATATATCACAGGAATCAATATTACAAAATGCAGATGAACAAACTGTCCGGAGTCTTAATGGTTGTAGAGTTACTGATCGAATCCTGCGTTTGGTTCCAAATATTCAgAACTTCCGCACAACATTGAGATGCATGAGGTTATGGGCTAAGCGTCGCGGCGTTTATTCAAATGTTGCAGGCTTTCTTGGTGGTATAAACTGGGCATTGCTTGTTGCACGGATATGCCAGCTATATCCCAATGCACTTCCTAATATGTTAGTATCTCGGTTCTTCAGGGTTTATACTCAGTGGCGTTGGCCAAATCCTGTCCTGCTTTGTCCTATTGAAGAAGGATCTCTCGGACTTCCTGTTTGGGATCCTAGAAGAAACCCCAAGGACAGATATCATCTTATGCCTATAATTACTCCTGCTTATCCTTGCATGAATTCTAGCTACAATGTGTCATCAAGTACTTTGCGGATTATGTTGGATGAGTTTCAGAGGGGAAATGAGATTTGTGAGGCTATGGAAGCTAACAAGGCTGATTGGGATACTCTTTTTGAGCcttatcttttttttgaaGCTTATAAGAATTATCTACAGATAGACATTAAGGCAGATAATGCTGATGATCTTAGAAACTGGAAAGGCTGGGTTGAGTCTCGCCTTCGCCAGCTGACATTGAAGATTGAGAGGCATACTTACGGTATGCTTCAGTGCCACCCACATCCTGGTGATTTTCCAGACAAATCTAGACCTTTCCACTGCTGTTGCTTCATGGGTCTGCAACGTAAGCAAGGAGTTCCTGTGAATGAAGGTGAACAGTTTGACATAAGGTTAACGGTTGAAGAATTTAAGCATTCTGTCAATCTGTACACCATGAGGAAACCTGGCATGGAAATCCACGTGTCACATGTGAAACGTCGGAATATACCTAACTTTGTATTTCCTGGTGGTGTTCGACTTTCTCGCCCATCTAAAGTAACTTGGGAGAGTAAGCGGAGTTCGGAATTGAAGGTTTCTGGCCAGAGTCAGGTTGATAAGTCTCATGAAGGTAAATCAATTGAAACAAGTgatgaaaggaagagaaagcgAACAGATgataatatgaataataacTTGAAGAATTCCAAGTGCTTTGCCTCTTTACCTCCCTCAAGTAAGGAATTTAATGATGACAGAACTCCTGCTAGCACTGCTAGTTCATGTTCTATGAAATATGATAACTCAGAAGCCAACAAGATCGGAGACCAGAATAGTGAGAACCCTGAATTGAAATCTCCAGGGGAGATTCCTTCTCAAAGTAGTAAGACTGATGGATCAGTGAAAGGTATTCCACAAATCAACCCTATGCCTGTGATTATGGATACATCAAATTCTAGAGAAGCAGAGAAGCTGGCTATAGAGAAGATTACATCTGGGTCATATAATTCGCACCAAGCTTTTTCTGAAGAGCCTGATGAGCTTGAAGATGATTTTGAGTATAAAAATCAAGTGAAAGATTATGGGGGCAACATGAATTGCAGCAGCTTGGATTCTTCAAACTCAAAGCCTGTGGAGGGAGCAGAGCCAGTTATTTCTAAGGAAGCTCCTTGCTCAACTCATTTATGCACAAATGGGCACTTGGACGAACTTGAGCCTGCTGAACTCACAGCACCATTGTTATGCGGGACACCTGCACCTATGCCCCAGCGGAAGCCGCTGATCAGGTTGAACTTCACCTCCTTGGGAAAAGCTGCTGACAAAGGATCCTA 2270 0.4273 MGSPGLSNRNNGQQRLGITEPISLGGPTEYDVNKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQIVKTWIKSVSRAKGLNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHASREEDFFGELGKMLSEMPEVSELHPVPDAHVPVMKFKFNGVSIDLLYGKLSLWVIPEDLDISQESILQNADEQTVRSLNGCRVTDRILRLVPNIQNFRTTLRCMRLWAKRRGVYSNVAGFLGGINWALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVLLCPIEEGSLGLPVWDPRRNPKDRYHLMPIITPAYPCMNSSYNVSSSTLRIMLDEFQRGNEICEAMEANKADWDTLFEPYLFFEAYKNYLQIDIKADNADDLRNWKGWVESRLRQLTLKIERHTYGMLQCHPHPGDFPDKSRPFHCCCFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNLYTMRKPGMEIHVSHVKRRNIPNFVFPGGVRLSRPSKVTWESKRSSELKVSGQSQVDKSHEGKSIETSDERKRKRTDDNMNNNLKNSKCFASLPPSSKEFNDDRTPASTASSCSMKYDNSEANKIGDQNSENPELKSPGEIPSQSSKTDGSVKGIPQINPMPVIMDTSNSREAEKLAIEKITSGSYNSHQAFSEEPDELEDDFEYKNQVKDYGGNMNCSSLDSSNSKPVEGAEPVISKEAPCSTHLCTNGHLDELEPAELTAPLLCGTPAPMPQRKPLIRLNFTSLGKAADKGS 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00706 756 PANTHER POLY A POLYMERASE 1 695 - -
Bva03g00706 756 MobiDBLite consensus disorder prediction 516 543 - -
Bva03g00706 756 Gene3D Poly(A) polymerase predicted RNA binding domain 364 478 - -
Bva03g00706 756 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 364 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Bva03g00706 756 Pfam Nucleotidyltransferase domain 82 165 IPR002934 GO:0016779
Bva03g00706 756 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Bva03g00706 756 MobiDBLite consensus disorder prediction 1 18 - -
Bva03g00706 756 CDD NT_PAP_TUTase 57 211 - -
Bva03g00706 756 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 695 - -
Bva03g00706 756 Gene3D - 17 359 - -
Bva03g00706 756 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Bva03g00706 756 Pfam Poly(A) polymerase predicted RNA binding domain 364 421 IPR007010 GO:0003723|GO:0043631
Bva03g00706 756 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Bva03g00706 756 SUPERFAMILY Nucleotidyltransferase 13 209 IPR043519 -
Bva03g00706 756 MobiDBLite consensus disorder prediction 503 625 - -
Bva03g00706 756 MobiDBLite consensus disorder prediction 544 615 - -
Bva03g00706 756 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00706 Bva-Chr3 4225501 4231875 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00706 K14376 - gmx:100816915 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00849 04 5577340 5582894 Bva03g00706 03 4225501 4231875 ECH
Bva03g00706 03 4225501 4231875 Bva03g00706 03 4225501 4231875 ECH