Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g02172 ATGGTGgaagaagcagaaagaatGCAGAAAATGATGAACCTTGGGAGTATTGGAAGCAGTGGGAGGCCATCGACGTCAGAAGAGAATGAAGACGAGGAGGTTTCGAGATTGGCCATTTCCACATTTCAAGCCAAGGAAGAAGAGATTGAGAGGAAAAAGATGGAGGTAAAAGAGAGAGTTGAACTTCAACTTAGCCGCGCTGAAGAAGAGACACGGCGCTTAGCCCAAATGTGGGAAGAGCTTGAAGTTATGGAAGATCCTATGAGAAAAGAAGTTGCCCTTACACGTAAGAAGATTGATATGGCTAACAAAGATTTGAAGACACTCGGACAGAGCTGCCAGAAGAAGGAAAAAGAGTATAAAGAAGCCCTAGAAGCTTTCAAcgaaaagaacaaagagaaatCTCATCTGGTAGCCACATTAATGGAGCTGCTGACGGAGAGTGAAAGAATGAGGATGAAGAAACTGGAGGAGCTGAGCAAAATCATTGAATCCTTGCAGTA 503 0.4115 MVEEAERMQKMMNLGSIGSSGRPSTSEENEDEEVSRLAISTFQAKEEEIERKKMEVKERVELQLSRAEEETRRLAQMWEELEVMEDPMRKEVALTRKKIDMANKDLKTLGQSCQKKEKEYKEALEAFNEKNKEKSHLVATLMELLTESERMRMKKLEELSKIIESLQ 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g02172 167 Coils Coil 99 133 - -
Bva03g02172 167 Coils Coil 39 77 - -
Bva03g02172 167 MobiDBLite consensus disorder prediction 1 35 - -
Bva03g02172 167 PANTHER RAB6-INTERACTING GOLGIN (DUF662) 8 166 - -
Bva03g02172 167 Pfam Transcriptional activator 13 165 IPR007033 -
Bva03g02172 167 PANTHER RAB6-INTERACTING PROTEIN GORAB 8 166 IPR007033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g02172 Bva-Chr3 19116336 19117978 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g02172 - - jre:109015383 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g02458 04 22434492 22436388 Bva03g02172 03 19116336 19117978 ECH
Bva13g02096 13 16585771 16587661 Bva03g02172 03 19116336 19117978 ECH
Bva03g02172 03 19116336 19117978 Bva03g02172 03 19116336 19117978 ECH