Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00712 atgcagaagaaaagaatgatgaGCTTTAGCAGAAAGGAAGTGTTGGAAGAAGTGAAGAAACAACTATGGTTAGCAGGGCCTCTCTTCACTGTTGGTCTGTTGCAGTACAGTTTGCAGGTGATATCTCTTATGTTTGTGGGTCATCTTGGTGAATTAAATCTATCCGGAGCTTCAATGGCCACTTCCTTTGCTTCAGTCACTGGTTTCAACTTGATGATGGGTTTGGCTAGTGCTTTGGACACCTTATGTGGGCAGTCATTTGGTGCAGGGCAGCACCATATGCTTGGCATGCACCTGCAAACAGCAATCTTTGTTCTTTCAATTATAAGTGCCTTTCTAGCCATCATGTGGGCATTTACCAAAGACATTCTAGTCGCAATGCACCAGCAAATTCCAATAGCAGAAGAAGCTGGAGAATATGCTCTCTTCATGATCCCAAGCCTTTTTGCCGATGCCATTCTCCAATGCCTTGTCAGATTTCTCCAGACTCAAAACATAGTCTTCCCCATGGTGATCAGTTCAGCAGCTGCAGCTTTGCTTCATGTCCTTATATGTTGGCTTTTGGTACTCAAATCTGGACTTGGAAGCAAGGGAGCTGCTATAGCAATTTCAATATCTTACTGGGCTAATGTGTTATTCATGGCATTTTACGtgaagttttcttcttcatgtGAAAAAACATGGACTGGCTTCACAAAGAAATCCCTGCAGAACATCCTTGactttctcaaaatttctattcCTTCAGCTCTTATGCTCTGtTTAAAGGTGTGGACATTTGAACTAATGGTTCTCTTGTCTGGTCTTCTTCCAAATCCACAGTTAGAAACTTCAGTGCTGTCAATATGccttaatacattttcaattgcttggatgattccttTTGGACTAAGCGCCGCAGTAAGCACAAGGGTCTCAAATGAGCTAGGTGCTGGGCATCCACGAGCTGCAAGCCTAGCAGTTTATGTGGTTCTGTTTTTGGCTATCACTGAGGGAATTATACTAGTATCAGTCATGATTCtactaagaaaaatatggGGCAATCTGTACAGCAGTGAAGAACAAGTTATAAAGTATGTAGCAGACATAATGCCCATTCTTGCTACCTCCAACTTCCTAGATGGAATTCAAAGCGTGCTTTCAGGCATTGCTAGAGGGAGTGGATGGCAGAAGATAGGGGCATGGGTGAATCTAGGATCCTTCTATCTTGCTGGAGTTCCTTCAGCAATTGTATTAGCTTTTGTTTTGCACATGAAAGGAAAAGGCCTCTGGTTGGGCATAGTTATTGCATTCATTGTGCAATCAATACTCTTTGCTATTATTACCATGAGAACTAACTGGGAGAAAGAAACAGATAAGGCTGCAAGGAGAGTCCAAAACACCAAAATCCATCAAGAGCTGCCACCCCAATTACCATCTTA 1421 0.3983 MQKKRMMSFSRKEVLEEVKKQLWLAGPLFTVGLLQYSLQVISLMFVGHLGELNLSGASMATSFASVTGFNLMMGLASALDTLCGQSFGAGQHHMLGMHLQTAIFVLSIISAFLAIMWAFTKDILVAMHQQIPIAEEAGEYALFMIPSLFADAILQCLVRFLQTQNIVFPMVISSAAAALLHVLICWLLVLKSGLGSKGAAIAISISYWANVLFMAFYVKFSSSCEKTWTGFTKKSLQNILDFLKISIPSALMLCLKVWTFELMVLLSGLLPNPQLETSVLSICLNTFSIAWMIPFGLSAAVSTRVSNELGAGHPRAASLAVYVVLFLAITEGIILVSVMILLRKIWGNLYSSEEQVIKYVADIMPILATSNFLDGIQSVLSGIARGSGWQKIGAWVNLGSFYLAGVPSAIVLAFVLHMKGKGLWLGIVIAFIVQSILFAIITMRTNWEKETDKAARRVQNTKIHQELPPQLPS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00712 473 CDD MATE_eukaryotic 17 453 IPR045069 GO:0042910|GO:1990961
Bva03g00712 473 Pfam MatE 248 409 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva03g00712 473 Pfam MatE 27 187 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Bva03g00712 473 PANTHER PROTEIN DETOXIFICATION 9 456 - -
Bva03g00712 473 PANTHER MULTIDRUG RESISTANCE PROTEIN 9 456 - -
Bva03g00712 473 TIGRFAM matE: MATE efflux family protein 27 424 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00712 Bva-Chr3 4260244 4262519 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00712 K03327 - gmx:100794717 728.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g00854 04 5611778 5614888 Bva03g00712 03 4260244 4262519 ECH
Bva03g00712 03 4260244 4262519 Bva03g00712 03 4260244 4262519 ECH