Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00303 ATGGCGACCTCTTCTTCCATCTTCAACTTCCTAGCTTTTCTCTTACCAACAAAAGCCCCACCACCACCCAAGACTCCACCTTCACAATTGAATTTCCCCCCTTCATCTACTCACTCTCAGACCCAGAAATCCGCTGAAAATTTGGCGCCACTGGTTGCTCAAGATCATCAtcactcttcttcttcttctgattCGGCTTCGTTATCAGCTGACTTGTCCTCAGTTATATGTCCCTCTCTCGCTTATGCCAACACTCTCTTCTTCAAATCAGCTTACAATGTTGAGGTGATTGTGGACGAAGACGAGCCTGAGGAGAGGCTACTCAACAGGTTTAGAAGGGAGGTCATGAAGGCTGGTGTTATCAATGAATGTAAGAGAAGAAGGTTCTTTGAGAACAAACAGGAGGGGAAGAAACGCAAGTCCCGAGAGGCTGCCAGGCGTAACCgtaaaagGCGCCCCCAGTCAAGGAATTTAATGCAGACCAAGCAGGACCTCCCAACAACCAAGGAGGAAGAGGACGAGGATAACTGGGATCTTCCCGGAGAAGACTTTCCATA 557 0.4614 MATSSSIFNFLAFLLPTKAPPPPKTPPSQLNFPPSSTHSQTQKSAENLAPLVAQDHHHSSSSSDSASLSADLSSVICPSLAYANTLFFKSAYNVEVIVDEDEPEERLLNRFRREVMKAGVINECKRRRFFENKQEGKKRKSREAARRNRKRRPQSRNLMQTKQDLPTTKEEEDEDNWDLPGEDFP 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00303 185 PANTHER PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED 1 185 - -
Bva03g00303 185 TIGRFAM S21p: ribosomal protein bS21 94 151 IPR001911 GO:0003735|GO:0005840|GO:0006412
Bva03g00303 185 Pfam Ribosomal protein S21 95 149 IPR001911 GO:0003735|GO:0005840|GO:0006412
Bva03g00303 185 Hamap 30S ribosomal protein S21 [rpsU]. 93 149 IPR001911 GO:0003735|GO:0005840|GO:0006412
Bva03g00303 185 PRINTS Ribosomal protein S21 family signature 105 114 IPR001911 GO:0003735|GO:0005840|GO:0006412
Bva03g00303 185 PRINTS Ribosomal protein S21 family signature 117 127 IPR001911 GO:0003735|GO:0005840|GO:0006412
Bva03g00303 185 PRINTS Ribosomal protein S21 family signature 129 139 IPR001911 GO:0003735|GO:0005840|GO:0006412
Bva03g00303 185 PRINTS Ribosomal protein S21 family signature 97 105 IPR001911 GO:0003735|GO:0005840|GO:0006412
Bva03g00303 185 MobiDBLite consensus disorder prediction 170 185 - -
Bva03g00303 185 MobiDBLite consensus disorder prediction 131 185 - -
Bva03g00303 185 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 185 IPR001911 GO:0003735|GO:0005840|GO:0006412
Bva03g00303 185 MobiDBLite consensus disorder prediction 31 47 - -
Bva03g00303 185 MobiDBLite consensus disorder prediction 18 47 - -
Bva03g00303 185 MobiDBLite consensus disorder prediction 142 156 - -
Bva03g00303 185 Gene3D Ribosomal protein S8 108 152 IPR038380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00303 Bva-Chr3 1814108 1815440 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00303 - - cpap:110814187 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01835 04 19049988 19051058 Bva03g00303 03 1814108 1815440 BWGD
Bva03g00303 03 1814108 1815440 Bva03g00303 03 1814108 1815440 ECH