Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva03g00172 ATGGAAAGGGTGTCGATTTTGATCTTGGTTTTGTTGGTGGGTTTCATGGGTTACCATGTTGAAGGGCTAGGAGTGAACTGGGGAACGCAGGCGACCCATCAGTTGCCTCCAGACACGGTGGTTCAAATATTGAAGAGTAATGGAATCCAGAAGGTGAAGCTCTTTGATGCAGATGAGAACACCATGAGTGCTCTGGCTGGAACTGGTATTGAAGTCATGGTTGCCATTCCCAATAATCAGCTTGCTGCCATGACCGATTATGATCGGGCCAGACAGTGGGTTCGAAAGAATGTTACCCGTTACAACTTCAACGGAGGAGTTAAAATCAAGTATGTAGCAGTTGGCAATGAGCCATTTTTGAGATCCTACAACAATTCATTCTTGAATATCACATTCCCAGCACTTCAAAACATTCAAAACGCCCTTAATGATGCTGGAGTTGGAGACACCATAAAGGCCACAGTGCCCTTAAATGCTGATGTCTACGAGTCTCCGGTGAATAACCCTGTTCCATCTGCAGGAAAATTCAGGACTGACATAAATGATCTCATGACCCAGATTGTCCAATTTCTAAACCAGAATGGCGCACCATTCACAGTCAACATATACCCTTTTCTAAGTCTTTACGGCAACGATAATTTCCCTTTTGACTATGCCTTCTTCGATGGGGTAACAAATCCCATAAACGACAATGGGATACAATACACCAACGTTTTCGATGCAAACTTTGATACCTTAGTCTCTGCTTTGACAGCGGCAGGATTTGGCCAGATGACCATTTTGGTAGGAGAAGTAGGGTGGCCTACTGGTGGTGACAAGAATGCCAACGTAGGCAATGCCATGAGATTTTACAATGGCCTTCTACCAAGGCTTGCAGCTAACAGAGGAACACCACGACGACCTGggtttattgaaatttatctCTTCGGTCTTATTGATGAAGATGCTAAGAGCATTTCCCCAGGAAACTTTGAGCGACACTGGGGAATCTTTAGGTACGATGGGCAGCCAAAATTTGCAATGGATTTGTCGGGTCAGGGACAAAACAAGTTCCTCGTAGGTGCCCAGGATGTTAATTATCTTGCTCCAAGGTGGTGCATGTTCAATCCAGATGCCAAGGATCTCAGCAGACTTGCTGATAATATCGATTATGCTTGCACTTATTCTGATTGCACAGCACTTGGATATGGGTCTTCTTGCAATAACTTGGATGCTAATGGGAATGCTTCTTATGCGTTTAATATGTATTTCCAGGTACAGAATCAGAATCCCTTGGCCTGCAATTTTCAAGGTTTGGCCAAGCTTACTACACAGAATATTTCACAGGgaaattgcaattttattattcagatAGCTACTTCGTCATCCTCTTGTTTGAGGTTCTCACTTTTGTCTTTCATAGTTGTTACATTATCCATGATTCTATTTTTGTA 1433 0.4243 MERVSILILVLLVGFMGYHVEGLGVNWGTQATHQLPPDTVVQILKSNGIQKVKLFDADENTMSALAGTGIEVMVAIPNNQLAAMTDYDRARQWVRKNVTRYNFNGGVKIKYVAVGNEPFLRSYNNSFLNITFPALQNIQNALNDAGVGDTIKATVPLNADVYESPVNNPVPSAGKFRTDINDLMTQIVQFLNQNGAPFTVNIYPFLSLYGNDNFPFDYAFFDGVTNPINDNGIQYTNVFDANFDTLVSALTAAGFGQMTILVGEVGWPTGGDKNANVGNAMRFYNGLLPRLAANRGTPRRPGFIEIYLFGLIDEDAKSISPGNFERHWGIFRYDGQPKFAMDLSGQGQNKFLVGAQDVNYLAPRWCMFNPDAKDLSRLADNIDYACTYSDCTALGYGSSCNNLDANGNASYAFNMYFQVQNQNPLACNFQGLAKLTTQNISQGNCNFIIQIATSSSSCLRFSLLSFIVVTLSMILFL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva03g00172 477 Pfam X8 domain 365 433 IPR012946 -
Bva03g00172 477 Gene3D - 361 458 - -
Bva03g00172 477 SUPERFAMILY (Trans)glycosidases 23 342 IPR017853 -
Bva03g00172 477 PANTHER GLYCOSIDE HYDROLASE, FAMILY 17, X8 5 462 - -
Bva03g00172 477 Pfam Glycosyl hydrolases family 17 23 342 IPR000490 GO:0004553|GO:0005975
Bva03g00172 477 ProSitePatterns Glycosyl hydrolases family 17 signature. 258 271 IPR000490 GO:0004553|GO:0005975
Bva03g00172 477 SMART X8_cls 364 447 IPR012946 -
Bva03g00172 477 Gene3D Glycosidases 22 351 - -
Bva03g00172 477 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 5 462 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva03g00172 Bva-Chr3 1069017 1072604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva03g00172 9 475 Miscellaneous Gene Families AT1G64760 72.591 0.0 704
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva03g00172 - - gmx:100815300 803.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01959 04 19713520 19716878 Bva03g00172 03 1069017 1072604 BWGD