Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00834 ATGGGCTTGATTTCTGGGATTTTCATGGGGATGGTTTTCGGTATCTTATTGATGGCTGGATGGCAGCGCATGATGAAGTACCGAAGCGCTAAGCGAATTGCAAAGGCAGCTGATATAAAACTCCTTGGATCTCTTGACAGAGATGATCTGAAGAAAATTTGTGGCGATAATTTTCCTGAATGGATATCATTTCCTGTATATGAACAGGTGAAATGGCTAAATAAGCAGCTGAGCAAAATGTGGCCATTTGTGGCAGATgcaGCAACATTGGTTATAAGAGAATCTGTTGAACCACTGCTGGAAGAGTACAGACCTCCTGGAATCACATCATTGAAGTTCAGCAAACTGTCTCTTGGAAATGTTGCTCCAAAGATTGAAGGTATTCGTGTTCAGAGTCTTAATGAAGGTCAAATCACCATGGACATTGATTTCCGATGGGGTGGTGATCCCAGCATTATTTTGGCGGTTGAAGCTGCACTTGTTGCATCAATTCCTATTCAGTTGAAGGATCTTCAAGTTTTCACCATCGTTCGTGTGATCTTCCAACTTGCTGAAGAGATACCCTGCATTTctgctgttgttgttgctcTACTTGCTGAGCCAAAGCCTAGAATTGATTACACTCTGAAGGCTGTTGGTGGAAGCTTGACAGCAATTCCAGGAATTTCAGATATTATTGATGATATTGTGCACACCATTGTTACTGATATGCTCCAATGGCCTCATAGGATTGTTGTTCCAATTGGTGGTATACCTGTGGATCTTAGTGAATTGGAGCTTAAACCACAAGGAAAACTTACAGTTACAATAGTGAAAGCAAATGATTTAAAGAACATGGAAATGATTGGGAAGTCTGATCCTTATGTGGTTTTGTATATTCGGCCACTATTTAAGGTCAAAACCAAAGTTATTGACAACAACCTGAATCCTACATGGAATGAGACATTTGAATTGATTGCAGAAGACAAGGAGACCCAGTCACTCATTCTTGAgGTTTATGATGAAGACATTGGGCAAGATAAGCGATTGGGAATAGTAAAATTACCTCTGAATGATCTGGAAGCAGAAACTCTAAAGGAATTTGAACTGAGGCTGCTCTCATCGCTGGACACCCTAAAGGTGAAAGACAAGAAGGATCGAGGAACCTTGACGATTAAGGTCTTGTACCATCAGTTTAACAAGGAAGAGCAGCTGGCTGCTCTAGAAGCAGAGAAAAAGATActagaagaaaggaagaaactgAAAGAGGCAGGAATTATAGGAAGCACGATGGATGCAGTTGGCTCTGGTGTTGGTTTGGTTGGTGGCGGTGTTGTTGCCGGTGCTGGTTTGGTTGGTAGTGGTGTTGTCGCCGGTGCTGGGCTCGTGGGAAGTGGCATTGGCGCTGGAGCTGGCCTCGTTGGCAGCGGAGTGGGGCTTGTCGGGAGCGGTCTTGGAGCCGTTGGCAGTGGATTAAGCAAGGCAGGAAAGTTTATGGGCAGGACCATCACAGGTTCTGGTGGCAACAGAAGGAGCGGTTCATCTACTCCTGTCACAAATGCACAAGAAAATGGCGGTGGTGCAAAGCCTCTCTG 1574 0.4295 MGLISGIFMGMVFGILLMAGWQRMMKYRSAKRIAKAADIKLLGSLDRDDLKKICGDNFPEWISFPVYEQVKWLNKQLSKMWPFVADAATLVIRESVEPLLEEYRPPGITSLKFSKLSLGNVAPKIEGIRVQSLNEGQITMDIDFRWGGDPSIILAVEAALVASIPIQLKDLQVFTIVRVIFQLAEEIPCISAVVVALLAEPKPRIDYTLKAVGGSLTAIPGISDIIDDIVHTIVTDMLQWPHRIVVPIGGIPVDLSELELKPQGKLTVTIVKANDLKNMEMIGKSDPYVVLYIRPLFKVKTKVIDNNLNPTWNETFELIAEDKETQSLILEVYDEDIGQDKRLGIVKLPLNDLEAETLKEFELRLLSSLDTLKVKDKKDRGTLTIKVLYHQFNKEEQLAALEAEKKILEERKKLKEAGIIGSTMDAVGSGVGLVGGGVVAGAGLVGSGVVAGAGLVGSGIGAGAGLVGSGVGLVGSGLGAVGSGLSKAGKFMGRTITGSGGNRRSGSSTPVTNAQENGGGAKPL 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00834 524 PRINTS C2 domain signature 306 319 IPR000008 -
Bva01g00834 524 PRINTS C2 domain signature 328 336 IPR000008 -
Bva01g00834 524 PRINTS C2 domain signature 281 293 IPR000008 -
Bva01g00834 524 Gene3D C2 domain 259 417 IPR035892 -
Bva01g00834 524 MobiDBLite consensus disorder prediction 495 524 - -
Bva01g00834 524 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 519 - -
Bva01g00834 524 ProSiteProfiles C2 domain profile. 247 365 IPR000008 -
Bva01g00834 524 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 264 391 IPR035892 -
Bva01g00834 524 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 66 249 IPR031468 GO:0008289
Bva01g00834 524 SMART C2_3c 265 362 IPR000008 -
Bva01g00834 524 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 519 IPR045050 GO:0008289
Bva01g00834 524 MobiDBLite consensus disorder prediction 498 516 - -
Bva01g00834 524 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 68 248 IPR039010 -
Bva01g00834 524 Pfam C2 domain 264 359 IPR000008 -
Bva01g00834 524 CDD C2 266 360 - -
Bva01g00834 524 Coils Coil 391 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00834 Bva-Chr1 5998809 6005555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00834 260 353 Lipid Metabolism Gene Families AT3G61300 31.915 2.35e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00834 - - gmx:100777838 764.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva01g00834 01 5998809 6005555 Bva02g01771 02 19927131 19931593 BWGD