Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva01g00146 ATGGTTGCAGCCGAAGTAATGGCCGAGAAAACCCTTCCGGGTGTTCCAATCTTGGCCAGAGACAACAGTTTCTCTTCTCCTCCAAGAAGgTTGGAAGGCAAAGTCGCCATTGTTACAGGGGGAGCAAGAGGAATTGGAGAAGCAGCGGTGCGagtttttgtcaaaaatggTGCTAAGGTTGTCATCGCCGATGTCGAGGATGCACTCGGAACCATGCTGGCAGAGATTCTATCTCCTTCTGCTACCTTTGTCCACTGCGATGTCAGCTCAGAAGAAGATGTAGAAAATCTGGTAAATTTCACAGTTTCTCGCTATGGCCAACTCGACATCATCTACAACAATGCCGGGGTTCTTGGGAATCAATCCAAGCACAAGAGCATTCTCGATTTCGACGCCGACGAATTCGACAGAATCATGGGTGTGAATGTGAAGGGAGTGGCTCTGGGAATCAAGCACGCAGCAAGGGTGATGATTCCAAGAGGAACTGGCTGCATAATCTCCACTGCCAGTGTTGCAGGGGTCATGGGAGGGCTTGGACCACACGCTTACACGGCTTCAAAACACGCCATTGTTGGGCTAACAAAGAACACGGCGTGTGAATTAGGGAAACACGGGATTCGGGTCAATTGCATTTCTCCCTTTGGCGTGGCCACATCGATGCTGGTGAATGCTTGGAGGAGCAGTTGCGAAGAAGACGAAGACGAAGAAGAGAGCTTGAATTTTGGGTTGCCTAGTCATGAAGAAGTGGAGAAAATGGAGGAATTTGTGAGAGGGTTAGCTAATTTGAAAGGGACCACTTTGAGAGCTAATGATATTGCAGAGGCTGCTCTTTATCTTGCTAGTGATGAATCAAAGTATGTTAGTGGTCATAACCTTGTTGTGGATGGTGGAATCACCTCCTCAAGAAATTGTGTTCACCTCTA 923 0.4735 MVAAEVMAEKTLPGVPILARDNSFSSPPRRLEGKVAIVTGGARGIGEAAVRVFVKNGAKVVIADVEDALGTMLAEILSPSATFVHCDVSSEEDVENLVNFTVSRYGQLDIIYNNAGVLGNQSKHKSILDFDADEFDRIMGVNVKGVALGIKHAARVMIPRGTGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTACELGKHGIRVNCISPFGVATSMLVNAWRSSCEEDEDEEESLNFGLPSHEEVEKMEEFVRGLANLKGTTLRANDIAEAALYLASDESKYVSGHNLVVDGGITSSRNCVHL 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva01g00146 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Bva01g00146 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Bva01g00146 307 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Bva01g00146 307 Gene3D - 22 306 - -
Bva01g00146 307 Pfam Enoyl-(Acyl carrier protein) reductase 248 299 - -
Bva01g00146 307 Pfam Enoyl-(Acyl carrier protein) reductase 40 236 - -
Bva01g00146 307 PANTHER SHORT-CHAIN DEHYDROGENASE REDUCTASE 2A-LIKE 5 307 - -
Bva01g00146 307 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 5 307 - -
Bva01g00146 307 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Bva01g00146 307 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Bva01g00146 307 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Bva01g00146 307 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Bva01g00146 307 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Bva01g00146 307 PRINTS Glucose/ribitol dehydrogenase family signature 262 282 IPR002347 -
Bva01g00146 307 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 299 IPR036291 -
Bva01g00146 307 CDD secoisolariciresinol-DH_like_SDR_c 30 299 IPR045309 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva01g00146 Bva-Chr1 1137863 1139041 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva01g00146 27 299 Acyl Lipid Metabolism Gene Families AT3G55290 31.944 8.55e-27 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva01g00146 - - gmx:100790562 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva02g00450 02 6013876 6015014 Bva01g00146 01 1137863 1139041 BWGD
Bva01g00146 01 1137863 1139041 Bva01g00146 01 1137863 1139041 ECH