Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa12g1302 ATGCAGCTCTGCATAGAAGGCGACAACATCCCCAACAGTGATCTCCTCGCATTCTACTCAAGGGCAATCATGAGTGACGAAGGAGAAAGAACTTGTCCTCTCTGTGCAGAAGAGATGGATTTGACAGATCAGCAGTTGAAACCATGCAAATGTGGTTATGAGATTTGTGTTTGGTGTTGGCATCACATATTAGATATGGCAGAGAAGGATGCCACAGAGGGGCGATGCCCTGCATGTCGTGCACCTTATGACAAGGAAAAGATTGTAGGGATGGCTGCTAATTGTGAGAGATTGGTGGCTGAAACTAATATGGAGAGAAAGATGAAGAACCAGAAAGCAAAGTCTAAGCCATCTGAAGGTCGGAAGCAACTCAGTAGTGTGCGAGTGATTCAGCGAAACCTTGTTTACATAGTTGGATTACCTCTTAATCTGGCAGATGAAGATCTTCTCCAGCGGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTGAAAGTGTCTATGTCTCGAACAGCAGCTGGTGTTATTCAACAATTTCCTAATAGTACATGTAGTGTGTATGTCTATATTCTTATCAAGCTTGCAGAGGCTCTCTCCTTAATGCTATTATGATATATAACTTATTCAAAGGAAGACGAGGCAATTCGTTGTATTCAAAGTGTACATGGATTTGTCTTGGAGGGTAGACCTTTAAGGGCATGTTTTGGAACCACGAAATATTGTCATGCATGGCTCCGAAACATGCCTTGCAGCAATCCTGATTGTCTATATCTGCATGAGATTGGCTCTCAAGAAGATAGTTTCACAAAAGATGAAATTATTTCAGCATACACTAGAAATCGAGTTCAACAAAGTACTGGTGCTGCAAGCAATATACAATGGCATTCAGGAAATGTATTGCCACCTCCTGTGGATGATTACATGAACAATTCTTCAGGGAAGCCCATTGCAAAAAATGCTTCAAGTAATTCTTCGACCATTTTAAGAGGTTCACCTCCTAATGGAAGTTCAGGGAGATCTGTTGGTCTTCCTGCTGCTGCTGCATGGGGTACACGGGCTACAATTTGTCAGCCCCCTGCTGGAGTTCTATCATGTCCAAATGGACCATCCAAGCCAAAACTTGACACAGTCAGTAGCACCCTAGCCTTTTCTTCAGCTGTTGCAGGCACAATTCAGGCTTCTGCATTGCGTGGTGACATGACAAAGAGGCCTACATCAAGTGATGGGAGTCATATTATGCTGCCTGCACTAAAAAATGAGTTGTCAAATCCAGTTAAACAATACAAGAGCATGGACAATCTCTGTAATGCAGGTGAAAAGACTGCTACGTCCAATGTTCCTCCCACACTATTATCCATGGACAGTGATCGAGGTAGTTCTACGATAGCAAACACAACAGATTTCACTGACATCACCAGGCAGTTATGCAGGTCTGGTCCTGAGGAAGCAATTACTGCTACCGATGAAGAGATTGAGAACTTGTGCTCTGATCTGTCCTCAGTTAACATTGATAGAGAAGTCCAAAAGGAACACTATGATAGTATAGACAAACATAACAGCCTAACGTCTGACTGTATAATGACAAAATCTTCAGGATCACAGAATAATCTTGATAAATTTCAAGATGCACTAAGTACAACTGCAACTACCAAAGCTGCAACATCAGATAATGAGGTGTGTATTCCAAGGGAACAGTGTGATTGGAAATTGGATTCACAAGCTCATTTAGTATCAGATATGACTGAAGTGGAAGATGACATAACATCTTTTGATAATCAAAGACTCAAGGATCCAGAAGTTTTTCGTTCTTCTTACTTGCCAAAATCAACAAGTTTTGTTAATGCTTCTAATCATACCATTCCTCATCTTCTGCAGCATGGTGAACCTTGCACTTCTCAATCTGCAGCTCATAAAATTGGGGGAGATTCATTATTACATCTATCTAGCATATTATGTAATGGTTACCCTGAGAAACTAGTCAGTGGCAGCTCCTATGGTTTGAATAGCACCACTGAAGGTTCTTTCTTGTTTCAAGATGAAAGAAACAAGCAATGCGATGAAAGATTTTCCTTAGAAGCAGCTAATGCTAGAAGTGATGCTGCTATAGATAAGGGTGAAAGTAGTATAATTTCAAATATATTGTCAATGGACTTTGATCCGTGGGATGACTCACTTACATCACCACAGAATTTGGCTAAATTGTTGGGTGACAACACTAATGAGCAGTGTGTTCCATTAAAAAAATCTAATTCTTGGAAAGTGCAAAATAATAACCAATCAAGATTCTCTTTTGCAAGGCAGGAGGAATCCAAAACTCGAACATTTGATGTACACACATCTTACGGTGTTGGCCAGCAATTGACAAAGAGCTCCTCACTGAGCCAGGATTTTCCAGAAAGAGACTTTTATCTAAATAAGTTGGGTATTGAAAATGGGTTCCCAACCAATAATAAGTTGGGTATTGAAAATGGGTTCCCAACCAATAACTTTGAGGAATCTGAAAATTTAGGCAGTGGTCACTTTGTTTCGTCTTCTAATAAGCTTTCTGCTGTTTCAAGAACTCAGATTACTGCTCCACCAGGATTTTCTGTTCCAAGCAGGGCACCACCACCAGGTTTCTCTTCTCATGAGAGAATGGGGCAAGCTTTTGACTCCATATCTGGAAATTCCTTCCTTGAGTCATCTTCCTTGCTGAGAAATTCATATCAGATGCCTACAAATGGAAATATAGTTGGCGTAGGGGACATAGAATTTAATGATCCGGCTATCTTGGCTGTTGGTAAGGGAAGACTTGAAGGTGCACTAAACAGCCCAGGGTTGGACATGAGATCAAATTTCACCCCACAGTTAAATTACTTAGAAAATGAGGCCTCACTTCAGTTATTGATGCAACGATCTCTCTCACAACAGCAGAACTATAGATTTTCTGAACTTGGGAATAATTTTTCTCAGCTTAATGATTCTTATGGACTCTCTTCAAGGTTAGATCAATCACAAATTAATAATTTGGTCCCTTTTCCTCAGTTGTCTCTGCAGCAGCAGTCTAGAAATGCAGTCTTGTCAAATGGACAATGGGATGGGTGGAATGAGATGCAGAGTGGAAACGATCTGGGTGTGGCTGAGCTTCTGAGAAATGAAAGACTTGGACTAAACAAGTTTTATGCTGGATATGAGGATTCAAAATATAGGATGAAAAATTCTGGGAATCTTTACAACAGAACATTTGGGATGTGA 3231 0.407 MQLCIEGDNIPNSDLLAFYSRAIMSDEGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHILDMAEKDATEGRCPACRAPYDKEKIVGMAANCERLVAETNMERKMKNQKAKSKPSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNSTCSVYVYILIKLAEALSLMLLXYITYSKEDEAIRCIQSVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRNRVQQSTGAASNIQWHSGNVLPPPVDDYMNNSSGKPIAKNASSNSSTILRGSPPNGSSGRSVGLPAAAAWGTRATICQPPAGVLSCPNGPSKPKLDTVSSTLAFSSAVAGTIQASALRGDMTKRPTSSDGSHIMLPALKNELSNPVKQYKSMDNLCNAGEKTATSNVPPTLLSMDSDRGSSTIANTTDFTDITRQLCRSGPEEAITATDEEIENLCSDLSSVNIDREVQKEHYDSIDKHNSLTSDCIMTKSSGSQNNLDKFQDALSTTATTKAATSDNEVCIPREQCDWKLDSQAHLVSDMTEVEDDITSFDNQRLKDPEVFRSSYLPKSTSFVNASNHTIPHLLQHGEPCTSQSAAHKIGGDSLLHLSSILCNGYPEKLVSGSSYGLNSTTEGSFLFQDERNKQCDERFSLEAANARSDAAIDKGESSIISNILSMDFDPWDDSLTSPQNLAKLLGDNTNEQCVPLKKSNSWKVQNNNQSRFSFARQEESKTRTFDVHTSYGVGQQLTKSSSLSQDFPERDFYLNKLGIENGFPTNNKLGIENGFPTNNFEESENLGSGHFVSSSNKLSAVSRTQITAPPGFSVPSRAPPPGFSSHERMGQAFDSISGNSFLESSSLLRNSYQMPTNGNIVGVGDIEFNDPAILAVGKGRLEGALNSPGLDMRSNFTPQLNYLENEASLQLLMQRSLSQQQNYRFSELGNNFSQLNDSYGLSSRLDQSQINNLVPFPQLSLQQQSRNAVLSNGQWDGWNEMQSGNDLGVAELLRNERLGLNKFYAGYEDSKYRMKNSGNLYNRTFGM 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa12g1302 1076 MobiDBLite consensus disorder prediction 851 878 - -
Bisa12g1302 1076 ProSiteProfiles Zinc finger RING-type profile. 32 80 IPR001841 -
Bisa12g1302 1076 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 24 1070 IPR039780 GO:0004842|GO:0030014
Bisa12g1302 1076 SUPERFAMILY RING/U-box 21 89 - -
Bisa12g1302 1076 MobiDBLite consensus disorder prediction 311 337 - -
Bisa12g1302 1076 CDD RRM_CNOT4 128 245 IPR034261 -
Bisa12g1302 1076 MobiDBLite consensus disorder prediction 302 342 - -
Bisa12g1302 1076 Gene3D - 134 233 IPR012677 -
Bisa12g1302 1076 SMART rrm2_1 134 233 IPR003954 GO:0003676
Bisa12g1302 1076 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 24 100 - -
Bisa12g1302 1076 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 100 IPR013083 -
Bisa12g1302 1076 CDD mRING-HC-C4C4_CNOT4 31 80 IPR039515 -
Bisa12g1302 1076 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 133 237 IPR000504 GO:0003723
Bisa12g1302 1076 MobiDBLite consensus disorder prediction 438 462 - -
Bisa12g1302 1076 Pfam RING/Ubox like zinc-binding domain 32 84 - -
Bisa12g1302 1076 SUPERFAMILY RNA-binding domain, RBD 120 244 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa12g1302 Bisa-ChrBisa12 22393489 22404981 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1302 12 22393489 22404981 Bisa02g3752 02 90884077 90891562 CCT
Bisa12g1302 12 22393489 22404981 Bisa12g1302 12 22393489 22404981 ECH