Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa02g3752 ATGAGAATCGAGATAAAAAGGGCAGAAGGGCAGTCTCCGGCAATCATGAGTGACGAAGGAGATAGGACTTGTCCTCTTTGTGCTGAAGAGATGGATTTGACTGATCAGCAGTTGAAGCCATGCAAATGTGGTTATGAGATATGTGTTTGGTGTTGGCATCACATAATTGACATGGCCGAGAAGGATGACACTGAAGGGCGATGCCCTGCATGTCGAACACCATATGACAAGGAGAAGATTGTCGGGATGGCTGCCAACTGTGAGAGGTTGGTGGCTGAAATTAATACTGAGAGGAAGATGAAGAATCAAAAAGCAAAGTCTAAATCTTCTGAAGGGCGGAAGCAACTCAGCAGCGTGCGAGTGATTCAGCGGAATCTTGTCTATATAGTTGGGTTGCCTCTTAATCTGGCAGATGAAGATATTCTCCAGCGGCGAGAGTATTTTGGTCAGTATGGTAAGGTCTTAAAGGTGTCGATGTCTCGGACAGCAGCTGGTGTCATTCAACAGTTTCCAAACAATACATGTAGTGTATATATTACTTACTCAAAGGAAGAAGAAGCAGTTCGGTGTATTCAACATGTGCATGGATTTGTCTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAGTATTGTCATGCATGGCTCCGGAACATGCCTTGCAGCAATCCTGATTGTTTATATCTACATGAGATTGGCTCTCAAGAAGATAGTTTCACAAAAGATGAAATAATTTCAGCATACACTAGCAGAGTTCAACAAATTACTGGTGCTGCTAATAATATGCAACGGCGGTCAGGGAATGTGTTGCCACCCCCAGTGGATGAATACATGAATAATTCTACAGGAAAACCCATAGTGAAAAATGCTTCAAGTAACTCTGCTAGCATTTTAAGAGGTTCACCTCCTAATGGAAGCTCTGGAAGATCTATTGGTCTTAATCCTGCTGCGGCATGGGGTACACGAGCTACAAATTGTCAGCCTCCTGCTGGAGGTCTATTATGTACCAATGGACCAGCTAAGCCAAAAGCTGATACTGTTAGTGGCACACGAGTCTTTTCTTCAGCTGTTGCTGGCTCAAGTCAGAATTCTTCAGTGCATAGTGATGCAACCAAGAGGCCACCATCAAGTGACGGAAGTCATAATAACCCTAGAGTACAAAATGAATTGTTCAAACCATTTAAACAATTCAGTAGCATGGACAATCTAAGTAATGCAGATGAAAAAACTGCTGCTTCAGATGGTTCGCCTGCACTTGTGAATTTGAACAGTGAGTTGTCTTCTTTACCATTAGCCAGAGATGGTGATAGAGGCATTTGTAGTACAAAAAACACAACAAATTCTACTGACATCACTAGGCAGTCGTGCAGCTCTGCTCCTGAGGAAGCAACTACTGCTACCTATGAAGAGATTCAAAACTTGTGCTCTGATTTGTCCTCTGTTAACATTGATAAAAATGGGCAAGATGAATATTATGGTATGGCCAGAACTACTAGCCCTCCTTCTGATTATGTCTTGAATAAATCTCGTCAACTTCAAGCATCACAGCAGCATAATGCTGAAAAATTTAGAGATGTACAAATTACTAGTGCAGCTAGTAAAGCTGCTCCATTAGATTATGAGGTGTGCATTTCTAGGGAGCAGTCTGATTGGAGATTGGATTCGCAAGCTCAAATAGTATCAGCTACAACTGAAGTGGAAGATGATATAGCTTCTTTCGATAATCAAAGGCTCAAAGATCCAGAAGTTGTCTGTCATTCTTCTTACTTGCCAAGGTCAACTAGTTTCCTTCATGTGCCAAACCATCCTAGTCGTCTTATGCAACATGGTGAACATTCCCCTGCTGTGAATTTTGATTTTGTATCTGCAGATTCTAAAGTTGGGGATGATTCTCTATTAAATGCATCCACCATATTATATAATGGTTACCCTGATAAGTTGGTCAGCAGCCACTCTACTGGTTTGAATAGCTCAACTGAACGTTTCTTGCTTCAAGATGAAAGAAACGGGCAATGCATTGGAAGATTATTTAGTGATTCAGTTAATGCTGGAAGTGATGCTGCATTGGATAAGGGTGAGAGTAGTATAATTTCAAATATATTGTCCATGGACTTTGATGCATGGGATGACTCGCTAACATCACCTCAGAATTTGGCTAAGTTGTTGGGTGACAGCACTGATAACCAGTCTGTTCCATTAAAAAAACCTAGTTCTTTGAAAGTGCAAAGTAACAATCAGTCAAGATTTTCTTTTGCAAGGCAGGATGAACCCAGAATCCAAACATTTCATGCACATCCATCTTATGGTGTCAGTGAGCAATTACCAAAGAGGGGCTCTTTCATACAGGATTTTGCTGAGAGAGACATGTATATGGATAAGAATTTGGGTATTGCAAATGGCTTCCCTTCCAGTAAATTTGAGGAATCTGAAAATCTAGGCAGTGGTCACTTTGTTGCTTCTTCTAATAAGCTTTCTGCTGTTTCAAGAGCTCAAATTTCAGCTCCCCCAGGATTTGCAGTTCCAAGCAGGCCTCCACCCCCAGGTTTTTCTTCATATGAAAGAGTGGAGCAGGCTTACAATTCGATATCTGGGAACTCACTACTTGACCCTTCCTCCTTGTTGAGAAATTCTTATCAGAACCCTGCTGTTGGAAATATTGTTGGTTGTACAGGGGACATTGAATTGGTAGATCCTGCTATTTTGGCAGTTGGTACAGGGAGACTTCAAGGTCCACTAAACAGCCCAGGGTTAGACATCAGATCAAATTTCACCCCACAATTAAATTACTTTGAGAATGAGGCCAGACTTCATCTATTGATGCAAAGACCCCTCTCACAGCCACAAAACAGGTTTTCTGAAGTTGGGAGTAATTTTTCTCAGATTGGTGATTCTTATGGCATTTCTTCAAGGTTAGATCAATCACAAGTCAGCAATTTGACCCCTTTTGCTCAGTTGTCCTTACAACAGTCTAGAAATGCTATCTTGTCAAATGGCCAATGGGATGGGTGGAATGAGGTACAGAGTGGAAGTAGTCTGGGTGTGGCAGAGCTTCTTAGAAATGAAAGACTTGGATTTAACAAGTTATATACAGGATATGATGATTCGAAATATCGGATGCCAAATTCTGGGGATCTTTACAACCGAACTTATGGGATGTGA 3165 0.4152 MRIEIKRAEGQSPAIMSDEGDRTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIIDMAEKDDTEGRCPACRTPYDKEKIVGMAANCERLVAEINTERKMKNQKAKSKSSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDILQRREYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQHVHGFVLEGRPLRACFGTTKYCHAWLRNMPCSNPDCLYLHEIGSQEDSFTKDEIISAYTSRVQQITGAANNMQRRSGNVLPPPVDEYMNNSTGKPIVKNASSNSASILRGSPPNGSSGRSIGLNPAAAWGTRATNCQPPAGGLLCTNGPAKPKADTVSGTRVFSSAVAGSSQNSSVHSDATKRPPSSDGSHNNPRVQNELFKPFKQFSSMDNLSNADEKTAASDGSPALVNLNSELSSLPLARDGDRGICSTKNTTNSTDITRQSCSSAPEEATTATYEEIQNLCSDLSSVNIDKNGQDEYYGMARTTSPPSDYVLNKSRQLQASQQHNAEKFRDVQITSAASKAAPLDYEVCISREQSDWRLDSQAQIVSATTEVEDDIASFDNQRLKDPEVVCHSSYLPRSTSFLHVPNHPSRLMQHGEHSPAVNFDFVSADSKVGDDSLLNASTILYNGYPDKLVSSHSTGLNSSTERFLLQDERNGQCIGRLFSDSVNAGSDAALDKGESSIISNILSMDFDAWDDSLTSPQNLAKLLGDSTDNQSVPLKKPSSLKVQSNNQSRFSFARQDEPRIQTFHAHPSYGVSEQLPKRGSFIQDFAERDMYMDKNLGIANGFPSSKFEESENLGSGHFVASSNKLSAVSRAQISAPPGFAVPSRPPPPGFSSYERVEQAYNSISGNSLLDPSSLLRNSYQNPAVGNIVGCTGDIELVDPAILAVGTGRLQGPLNSPGLDIRSNFTPQLNYFENEARLHLLMQRPLSQPQNRFSEVGSNFSQIGDSYGISSRLDQSQVSNLTPFAQLSLQQSRNAILSNGQWDGWNEVQSGSSLGVAELLRNERLGFNKLYTGYDDSKYRMPNSGDLYNRTYGM 1054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa02g3752 1054 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 16 92 - -
Bisa02g3752 1054 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 126 207 - -
Bisa02g3752 1054 MobiDBLite consensus disorder prediction 265 315 - -
Bisa02g3752 1054 CDD mRING-HC-C4C4_CNOT4 23 73 IPR039515 -
Bisa02g3752 1054 SUPERFAMILY RNA-binding domain, RBD 119 205 IPR035979 GO:0003676
Bisa02g3752 1054 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 16 1048 IPR039780 GO:0004842|GO:0030014
Bisa02g3752 1054 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 205 IPR000504 GO:0003723
Bisa02g3752 1054 ProSiteProfiles Zinc finger RING-type profile. 24 72 IPR001841 -
Bisa02g3752 1054 SMART rrm1_1 126 207 IPR000504 GO:0003723
Bisa02g3752 1054 Pfam RING/Ubox like zinc-binding domain 24 76 - -
Bisa02g3752 1054 MobiDBLite consensus disorder prediction 441 462 - -
Bisa02g3752 1054 CDD RRM_CNOT4 120 219 IPR034261 -
Bisa02g3752 1054 SMART rrm2_1 126 207 IPR003954 GO:0003676
Bisa02g3752 1054 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 92 IPR013083 -
Bisa02g3752 1054 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 211 IPR000504 GO:0003723
Bisa02g3752 1054 SUPERFAMILY RING/U-box 14 81 - -
Bisa02g3752 1054 MobiDBLite consensus disorder prediction 284 313 - -
Bisa02g3752 1054 Gene3D - 126 207 IPR012677 -
Bisa02g3752 1054 MobiDBLite consensus disorder prediction 359 388 - -
Bisa02g3752 1054 MobiDBLite consensus disorder prediction 432 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa02g3752 Bisa-ChrBisa02 90884077 90891562 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa12g1302 12 22393489 22404981 Bisa02g3752 02 90884077 90891562 CCT